View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_high_8 (Length: 248)
Name: NF3174_high_8
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3139345 - 3139575
Alignment:
| Q |
1 |
caacttgtaattgcaaatcattgtatttagttaaataaaaacacccaaaatataaaaacacgtgcttattacaataattatcaaatgtttaagatgatta |
100 |
Q |
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| T |
3139345 |
caacttgtaattgcaaatcattgtatttagttaaataaaaacacccaaaatataaaaacacgtgcttattacaataattatcaaatgtttaagatgatta |
3139444 |
T |
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| Q |
101 |
attaattttagtgctatataaaatgatatttgtatat--atgtgcggatcgcgtagctagacactagaactatgtacctgcactcataaccatttaaatt |
198 |
Q |
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| T |
3139445 |
attagttttagtgttatataaaatgatatttgtatatacatgtgcggatcgcgtagttagacactggaactatatacctgcactcataaccatttaaatt |
3139544 |
T |
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| Q |
199 |
cgcggataattattttagttcaacccataca |
229 |
Q |
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| T |
3139545 |
cgcggataattattttagttcaacccataca |
3139575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 25968135 - 25968087
Alignment:
| Q |
37 |
aaaaacacccaaaatataaaaacacgtgcttattacaataattatcaaa |
85 |
Q |
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||||||| | |||||||||||||| |||| ||||||||||| ||||||| |
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| T |
25968135 |
aaaaacatctaaaatataaaaacaagtgcatattacaataaatatcaaa |
25968087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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