View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_low_10 (Length: 309)
Name: NF3174_low_10
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 301
Target Start/End: Complemental strand, 3110456 - 3110158
Alignment:
| Q |
4 |
ttcaacatgataaagtgaaaatggctttggaggtttataatgaaatcaagagggttggtttgtctcctaatcatcacacttatgctattgttatcaagg- |
102 |
Q |
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| T |
3110456 |
ttcaacatgataaagtgaaaatggctttggaggtttataaagaaatcaagagggttggtttgtgtcctaatcatcacacttatgctattgttatcaaggg |
3110357 |
T |
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| Q |
103 |
cttgtgtaagaatagtgatgatttgaaacatgtggaatatgtatttgatgaaatggaggaagctggtgtgactctgaattcgtattgttacgctgcttat |
202 |
Q |
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| T |
3110356 |
cttgtgtaagaatagtgatgatttgaaacacgtggaatatgtatttgatgaaatggaggaagctggtgtgactccgaattcgtattgttacgctgcttat |
3110257 |
T |
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| Q |
203 |
attgaggggttgtgtaaaaataacatgtctgatgtgggatataagctgctcgaacgatgtaaagcgagtaatgcacctatagaggattatgcctatgct |
301 |
Q |
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| T |
3110256 |
attgaggggttgtgtaaaaataacatgtctgatgtgggatataagctgctcgaacgatgtagagcgagtaatgcacctatagaggtttatgcctatgct |
3110158 |
T |
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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 41626550 - 41626648
Alignment:
| Q |
146 |
tttgatgaaatggaggaagctggtgtgactctgaattcgtattgttacgctgcttatattgaggggttgtgtaaaaataacatgtctgatgtgggatat |
244 |
Q |
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| T |
41626550 |
tttgatgaaatgaaagaagctggggtgactccgaattcgtattgctatgcagcttatattgaggggttgtgtaataatcatcagtctgatttgggatat |
41626648 |
T |
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