View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3174_low_12 (Length: 269)
Name: NF3174_low_12
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 36675479 - 36675251
Alignment:
| Q |
24 |
aagatatgtgcctagctattgtaatgtttatttatcttctattactctataaattatgggctccttgaaggaattttttggtttattccttcttatgttc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36675479 |
aagatatgtgcctagctattgtaatgtttatttatcttctattactctataaattatgggctccttgaaggaattttttggtttattccttcttatgttc |
36675380 |
T |
|
| Q |
124 |
ttataactagatcctattgatctctatctctcttttgtttggggttgatgtggagaaagttatgctatattgtgcttgagacaaaactaatatagttctt |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36675379 |
ttataactagatcctattgatctctatctctcttttgtttggggttgatgtggagaaagttatgctatattgtgcttgagacaaacctaatatagttctt |
36675280 |
T |
|
| Q |
224 |
agtcaattctacctaccttggttggaaat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36675279 |
agtcaattctacctaccttggttggaaat |
36675251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 36669818 - 36669581
Alignment:
| Q |
24 |
aagatatgtgcctagctattgtaatgtttatttatcttctattactctataaattatgggctccttgaaggaattttttggtttattccttcttatgtt- |
122 |
Q |
| |
|
|||| |||||||||||||||| | |||||||| || || ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36669818 |
aagagatgtgcctagctattgcattgtttattcatattttattattctataaatcatgggctccttaaaggaattttttggtttattccttcttatgtta |
36669719 |
T |
|
| Q |
123 |
--------cttataactagatcctattgatctctatctctcttttgtttggggttgatgtggagaaagttatgctatattgt---gcttgagacaaaact |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
36669718 |
tttacgttcttataactagatccttttgatctctatctctcttttgcttggggttgatgtggagaaagttatgctgtattgtgcagcttgagac-aaact |
36669620 |
T |
|
| Q |
212 |
aatatagttcttagtcaattctacctaccttggttggaaat |
252 |
Q |
| |
|
| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
36669619 |
a--atagttcttggtcagttctacctaccttggttggaaat |
36669581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University