View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_low_16 (Length: 237)
Name: NF3174_low_16
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3110443 - 3110663
Alignment:
| Q |
1 |
tttatcatgttgaactaaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaat |
100 |
Q |
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| T |
3110443 |
tttatcatgttgaattaaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaat |
3110542 |
T |
|
| Q |
101 |
gcttcatcaaacatattaagaccaacacaagctttagcaaacacatcaaatgctctgagtatagccaagtaatgttttttattctcaacaacatcaacac |
200 |
Q |
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| T |
3110543 |
gctccatcaaacatgttaagaccaacacaagctttagcaaacacatcaaatgctctgagtatagccaagtaatgttttttattctcaacaacatcaacac |
3110642 |
T |
|
| Q |
201 |
cctctaatagcttctcaaaca |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3110643 |
cctctaatagcttctcaaaca |
3110663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 41626404 - 41626265
Alignment:
| Q |
17 |
aaacggttaataagaaagttacaagcaacaatactaggaagaatctcaaacctagtaacttgaaaatgaaacaagaaatcaaatgcttcatcaaacatat |
116 |
Q |
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||||||||||||||||||||||| |||| |||| | ||||||||| ||||||| ||| |||||| ||||| |||||||| || ||||||||||| | |
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| T |
41626404 |
aaacggttaataagaaagttacaggcaaaaatatttggaagaatcccaaacctcctaatttgaaacataaacatgaaatcaatagcatcatcaaacatgt |
41626305 |
T |
|
| Q |
117 |
taagaccaacacaagctttagcaaacacatcaaatgctct |
156 |
Q |
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| T |
41626304 |
taagaccaacacaagctttaacaaacccaacaaaagctct |
41626265 |
T |
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