View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_low_17 (Length: 237)
Name: NF3174_low_17
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 24518238 - 24518437
Alignment:
| Q |
18 |
attatagattcaaatagtattaggtaggattcgatgaagtttgttatattttgttcctagcatat--atattggcgtgctctatgagtgcgttggtgcac |
115 |
Q |
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| T |
24518238 |
attatatattcaaatagtattaggtaggattcgatgaagtttgttatattttgttcctagcatatatatattggcgtgctctatgagtgcgttggtgcac |
24518337 |
T |
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| Q |
116 |
gtcccaccacacaatatttcaatgtaaagttatatagttttggtatgttttgagtttagaccttcaacatgtcatgtcatttccccttcacgtatcagca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24518338 |
gtcccaccacacaatatttcaatgtaaagttatatagttttggtat-------gtttagaccttcaacatgtcatgtcatttccccttcacgtatcagca |
24518430 |
T |
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