View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_low_3 (Length: 439)
Name: NF3174_low_3
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 32096110 - 32096520
Alignment:
| Q |
18 |
caaaaatcactctttaaaactttaagaaaatcacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgtgaggtata |
117 |
Q |
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| T |
32096110 |
caaaaattactctttaaaactttaaaaaaattacgatatcactgtgattttatcaaactcatcgtcaatttcaatcatgcactaaatgttgtgaggtata |
32096209 |
T |
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| Q |
118 |
atttggttaagtgctctcttaacttcaacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaaaacaccat |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096210 |
atttggttaagtgctctcttaacttccacaatactaactttcttcccatttccaccattttccttcaccttagccctcaactccgcaacaaaaacaccat |
32096309 |
T |
|
| Q |
218 |
tattaagcgaagattgaactccaataacctcaatcctcaactccctcaacattaccataacatcaagcaacaatccttctctatgcaaacactcaatctc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32096310 |
tattaagcgaagattgaactccaataacctcaatcctcaactccctcaacattaccataacgtcaagcaacaatccttctctatgcaaacactcaatctc |
32096409 |
T |
|
| Q |
318 |
caacaaagcatcactctcaataatcgaaacctgaaccgacgaaacaacctccgtctcaactgctttcgctctcgtggctccacactcttccacaatcctc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096410 |
caacaaagcatcactctcaataatcgaaacctgaaccgacgaaacaacctccgtctcaactgctttcgctctcgtggctccacactcttccacaatcctc |
32096509 |
T |
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| Q |
418 |
acctttttctt |
428 |
Q |
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| T |
32096510 |
acctttttctt |
32096520 |
T |
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