View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3174_low_6 (Length: 343)

Name: NF3174_low_6
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3174_low_6
NF3174_low_6
[»] chr6 (49 HSPs)
chr6 (117-327)||(4560716-4560926)
chr6 (117-327)||(4574518-4574729)
chr6 (117-324)||(4266877-4267085)
chr6 (139-323)||(4602003-4602187)
chr6 (132-303)||(4480927-4481098)
chr6 (117-311)||(4563937-4564132)
chr6 (117-326)||(4461334-4461544)
chr6 (134-327)||(4613447-4613640)
chr6 (139-327)||(4557335-4557523)
chr6 (117-323)||(4617236-4617443)
chr6 (122-299)||(4490071-4490249)
chr6 (134-327)||(4514850-4515043)
chr6 (134-327)||(4579642-4579835)
chr6 (139-327)||(4585846-4586034)
chr6 (139-327)||(4626161-4626349)
chr6 (169-327)||(4470013-4470171)
chr6 (139-328)||(4622351-4622540)
chr6 (148-323)||(4256354-4256530)
chr6 (139-323)||(4259888-4260072)
chr6 (149-303)||(4504141-4504295)
chr6 (134-327)||(4571182-4571375)
chr6 (139-327)||(4506067-4506255)
chr6 (134-299)||(3171979-3172144)
chr6 (134-311)||(4592457-4592634)
chr6 (18-118)||(4575000-4575100)
chr6 (148-327)||(4457804-4457983)
chr6 (134-327)||(4598381-4598574)
chr6 (18-118)||(4561196-4561296)
chr6 (148-327)||(4516531-4516710)
chr6 (147-327)||(4493165-4493345)
chr6 (148-323)||(4568270-4568445)
chr6 (19-118)||(4458287-4458386)
chr6 (18-96)||(3172455-3172533)
chr6 (139-257)||(4299555-4299673)
chr6 (29-118)||(4470495-4470584)
chr6 (17-118)||(4481385-4481486)
chr6 (17-99)||(4503724-4503806)
chr6 (36-118)||(4514479-4514561)
chr6 (46-118)||(4299189-4299261)
chr6 (59-118)||(4266547-4266606)
chr6 (163-274)||(4391885-4391996)
chr6 (27-118)||(4461815-4461906)
chr6 (36-99)||(4506568-4506631)
chr6 (58-99)||(4489735-4489776)
chr6 (61-118)||(4602484-4602541)
chr6 (71-118)||(4259547-4259594)
chr6 (36-106)||(4255979-4256049)
chr6 (58-96)||(4484163-4484201)
chr6 (49-89)||(4568765-4568805)
[»] chr3 (1 HSPs)
chr3 (139-323)||(1281328-1281512)
[»] chr8 (4 HSPs)
chr8 (117-323)||(1674440-1674647)
chr8 (147-327)||(16686009-16686189)
chr8 (134-326)||(20863572-20863764)
chr8 (18-118)||(20863183-20863283)
[»] chr5 (4 HSPs)
chr5 (117-324)||(24103212-24103420)
chr5 (135-323)||(27999829-28000017)
chr5 (33-118)||(24103691-24103776)
chr5 (71-120)||(24107065-24107114)
[»] scaffold0477 (1 HSPs)
scaffold0477 (139-310)||(4420-4591)
[»] scaffold0288 (2 HSPs)
scaffold0288 (139-326)||(3453-3640)
scaffold0288 (27-116)||(3067-3156)
[»] chr7 (1 HSPs)
chr7 (135-327)||(3086630-3086822)
[»] scaffold0475 (1 HSPs)
scaffold0475 (163-290)||(3443-3569)
[»] chr2 (1 HSPs)
chr2 (146-188)||(1351056-1351098)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 117 - 327
Target Start/End: Complemental strand, 4560926 - 4560716
Alignment:
Q  117 ttttctcatctgatttttgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattc 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4560926 ttttctcatctgatttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattc 4560827  T
Q  217 ttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4560826 ttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagat 4560727  T
Q  317 atatttgcaat 327  Q
    |||||||||||    
T  4560726 atatttgcaat 4560716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 117 - 327
Target Start/End: Complemental strand, 4574729 - 4574518
Alignment:
Q  117 ttttctcatctgattttt-gaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  4574729 ttttctcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacctttcagtcggtggatt 4574630  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaaga 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| |||    
T  4574629 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttatgttggccatttttttcggatcagccagcaaactgcaga 4574530  T
Q  316 tatatttgcaat 327  Q
    ||||||||||||    
T  4574529 tatatttgcaat 4574518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 117 - 324
Target Start/End: Original strand, 4266877 - 4267085
Alignment:
Q  117 ttttctcatctgatttttg-aaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    |||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||  | ||||||||    
T  4266877 ttttgtcatctgatttttttaaagaaatttcagatagaggactaatagcaagttggtgtccacaagataaagtgttgaaccacccttcgattggtggatt 4266976  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaaga 315  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||| ||||||| |||    
T  4266977 cttgactcattgcggatggaattcaaccactgaaagcatatgtgctggagtgccaatgttgtgttggccattctttggtgatcagccaacaaactgtaga 4267076  T
Q  316 tatatttgc 324  Q
    | |||||||    
T  4267077 tttatttgc 4267085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 139 - 323
Target Start/End: Complemental strand, 4602187 - 4602003
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||  |||| ||||||||||||||||| ||||||||||    
T  4602187 gaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcgatcggcggattcttgactcattgtggatggaact 4602088  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttg 323  Q
    |||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||| ||||||| |||| ||||||    
T  4602087 caaccactgaaagcatatgtgctggagtgccgatgttgtgttggcctttttttgccgatcagccaacaaactgtagatttatttg 4602003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 4481098 - 4480927
Alignment:
Q  132 tttgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcgga 231  Q
    |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||    
T  4481098 tttgaaagaaatttcaaatagaggcctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaatcggcggattcttgactcattgcgga 4480999  T
Q  232 tggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagcca 303  Q
    ||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  4480998 tggaactcaaccactgaaagtgtatgtgctggagtgccaatgttgtgttggccattctttgccgatcagcca 4480927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 117 - 311
Target Start/End: Complemental strand, 4564132 - 4563937
Alignment:
Q  117 ttttctcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    |||| |||||||| ||| |||| ||||||| |||||||||  |||| ||||||||||||||||| |||||||||||||||||||| ||| | || |||||    
T  4564132 ttttgtcatctgagtttgtgaatgaaatttcagatagaggcttaattgcaagttggtgtccacaggagaaagtattgaaccacccttcaattggcggatt 4564033  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  4564032 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattctttggtgatcagccaacaaactg 4563937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 117 - 326
Target Start/End: Complemental strand, 4461544 - 4461334
Alignment:
Q  117 ttttctcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    |||| |||||||| ||| |||| ||||||| ||||||||| ||||||||||| |||||||| |||||| ||||| |||||||||| ||| | ||||||||    
T  4461544 ttttgtcatctgagtttgtgaatgaaatttcagatagaggcctaatagcaagctggtgtccgcaagagcaagtactgaaccacccttcaattggtggatt 4461445  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaaga 315  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||  ||||||||||||||||| |||    
T  4461444 cttgactcattgtggatggaattcaaccactgaaagcatatgtgctggagtgccgatgttgtgttggccattctttggtgatcagccagcaaactgtaga 4461345  T
Q  316 tatatttgcaa 326  Q
    | |||||||||    
T  4461344 tttatttgcaa 4461334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 134 - 327
Target Start/End: Original strand, 4613447 - 4613640
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| ||||||||| ||||| || || |||||||| |||||| ||||||| |||||||| ||| | || ||||||||||||||||| |||||    
T  4613447 tgaatgaaatttcagatagaggcctaatcgcgagctggtgtcctcaagagcaagtattaaaccacccttcaattggcggattcttgactcattgtggatg 4613546  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||||||    
T  4613547 gaactcaaccactgaaagcatatgtgctggagtgccaatgttgtgttggccatttttcgcggatcagccagcaaactgcagatatatatgcaat 4613640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 139 - 327
Target Start/End: Complemental strand, 4557523 - 4557335
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| ||||| ||  | ||||| || |||||| ||||||| ||||| || ||| | |||||||||||||||||||| ||||||||||    
T  4557523 gaaatttcagatagaggcctaatcgcgggctggtgcccgcaagagcaagtattaaaccatccttcaattggtggattcttgactcattgtggatggaact 4557424  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  4557423 caaccactgaaagcatatctgctggagttccaatgttgtgttggccattttttgctgatcagccagcaaactgcagatatatttgcaat 4557335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 117 - 323
Target Start/End: Complemental strand, 4617443 - 4617236
Alignment:
Q  117 ttttctcatctgatttttgaaa-gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    ||||||||||||| |||  ||| ||||||  ||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||| |||| |||||    
T  4617443 ttttctcatctgagtttacaaatgaaattgcagatagaggcctaatagcaagttggtgtccacaagacaaagtgttgaaccacccttcaatcggaggatt 4617344  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaaga 315  Q
    ||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || |||||| || |||| |||    
T  4617343 cttgactcattgcggatggaattcaaccactgaaagtatatgcgctggagtgccaatgttgtgttggccattttttgccgaccagccaacagactgtaga 4617244  T
Q  316 tatatttg 323  Q
    | ||||||    
T  4617243 tttatttg 4617236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 122 - 299
Target Start/End: Original strand, 4490071 - 4490249
Alignment:
Q  122 tcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttga 220  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| | |||||||||||||    
T  4490071 tcatctgattttttgaaagaaatttcagatagaggactaatagcaagttggtgtccacaagagaaggtattgaatcacccttcaattggtggattcttga 4490170  T
Q  221 ctcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatca 299  Q
    ||||||| ||||||||||||| ||  || || |||||||||||||| |||||||||||||||||||||||||| |||||    
T  4490171 ctcattgtggatggaactcaatcatggagagtatatgtgctggagtgccaatgttgtgttggccattttttgctgatca 4490249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 134 - 327
Target Start/End: Original strand, 4514850 - 4515043
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| | || |||||||||||||||||||||||    
T  4514850 tgaatgaaattgcagatagaggcctaatagcaagttggtgtccacaagagaaagttttgaaccacccttcaattggcggattcttgactcattgcggatg 4514949  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||||||||||| |||||||| |||||||| |||||| | ||||||| ||| ||||  ||||| ||| ||||||| |||| ||||||||||    
T  4514950 gaactcaaccactgagagcatatgcgctggagtgccaatgctttgttggcaattctttggtgatcaaccaacaaactgtagatttatttgcaat 4515043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 134 - 327
Target Start/End: Complemental strand, 4579835 - 4579642
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| ||||||||| |||||| | || |||||||| |||||| ||||| |||||||||| ||| | ||||||||||||||||||||||||||    
T  4579835 tgaatgaaatttcagatagaggcctaataacgagctggtgtccgcaagagcaagtactgaaccacccttcaattggtggattcttgactcattgcggatg 4579736  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || ||||| |||| || ||| |||||| | ||||||    
T  4579735 gaactcaatcactgaaagcatatctgctggagttccaatgttgtgttggccatttttcgctgatcacccagtaagctgcagatatttatgcaat 4579642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 139 - 327
Target Start/End: Complemental strand, 4586034 - 4585846
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| ||||| ||  ||||||| || |||||| |||||||||||||||| ||| | ||||||||||||||||| || ||||||||||    
T  4586034 gaaatttcagatagaggcctaatcgcgggttggtgcccgcaagagcaagtattgaaccacccttcaattggtggattcttgactcactgtggatggaact 4585935  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||| ||||||| |||  ||||||||||    
T  4585934 caaccactgaaagcatatgtgctggagtgccaatgttgtgttggccattcattgctgatcagccaacaaactgtagaattatttgcaat 4585846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 139 - 327
Target Start/End: Complemental strand, 4626349 - 4626161
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| ||||| ||||| |||||||| |||||||||||| ||||||| || ||| | ||||||||||| |||||||| ||||||||||    
T  4626349 gaaatttcagatagaggcctaatcgcaagctggtgtccgcaagagaaagtactgaaccatccttcaattggtggattcttaactcattgtggatggaact 4626250  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    |||||| |||||||||||| ||||||||||||||| |||||||||||  |||||| ||||||||| |||| || |||||||||||||||    
T  4626249 caaccattgaaagcatatgcgctggagttccaatgctgtgttggccaaattttgctgatcagccaacaaattgtagatatatttgcaat 4626161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 4470171 - 4470013
Alignment:
Q  169 tggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttc 268  Q
    |||||||| |||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  4470171 tggtgtcctcaagagcaagtactgaaccacccttcaatcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgcgctggagtgc 4470072  T
Q  269 caatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||||||||||||||| ||||  ||||||| |||||| || |||| ||||||||||    
T  4470071 caatgttgtgttggccattctttggtgatcagctagcaaattgtagatttatttgcaat 4470013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 139 - 328
Target Start/End: Complemental strand, 4622540 - 4622351
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| || |||||| ||||| ||| ||||||||||||||||| ||||| | ||||||||  || | |||||||||||||||||||| |||||||| |    
T  4622540 gaaatttcaggtagaggcctaatcgcaggttggtgtccacaagaggaagtacttaaccaccctgcaattggtggattcttgactcattgtggatggaatt 4622441  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaatt 328  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||||||||| || ||||||||| ||||||| |||||||| |||||||    
T  4622440 caaccaccgaaagcatatgtgctggagtttcaatgctgtgttggccatttttcgctgatcagccaacaaactgtagatatatctgcaatt 4622351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 148 - 323
Target Start/End: Original strand, 4256354 - 4256530
Alignment:
Q  148 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactg 247  Q
    |||||||||||||| |  ||||||||||| |||||| ||||| |||||||| | ||||| |||||||||||||||||||| |||||||||||||||| ||    
T  4256354 gatagaggactaatcgagagttggtgtccgcaagagcaagtactgaaccactcttcagttggtggattcttgactcattgaggatggaactcaaccattg 4256453  T
Q  248 aaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcag-ccagcaaactgaagatatatttg 323  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||| ||||||| |||| ||||||    
T  4256454 aaagcatttgtgccggagttccaatgttgtgttggccattttttgctgatcagaccaacaaactgtagatttatttg 4256530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 139 - 323
Target Start/End: Original strand, 4259888 - 4260072
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    |||||||  |||||||| ||||| || || |||||||| |||||| ||||| |||||||| | ||||| ||||||||||| |||||||||||||||||||    
T  4259888 gaaatttcggatagaggcctaatcgcgagctggtgtccgcaagagcaagtactgaaccactcttcagttggtggattcttaactcattgcggatggaact 4259987  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttg 323  Q
    |||||| ||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||    
T  4259988 caaccattgaaagcatttgtgccgaagttccaatgttgtgttggccattttttgctgatcagccaacaaactgtagatttatttg 4260072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 149 - 303
Target Start/End: Original strand, 4504141 - 4504295
Alignment:
Q  149 atagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactga 248  Q
    ||||||||||  |||||||||||||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||||||| ||||||||||||||||||||    
T  4504141 atagaggacttgtagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattcttgactcattgtggatggaactcaaccactga 4504240  T
Q  249 aagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagcca 303  Q
    |||  | ||||||||||| |||||||||||||||||||||||| | |||||||||    
T  4504241 aagtgtttgtgctggagtgccaatgttgtgttggccatttttttctgatcagcca 4504295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 134 - 327
Target Start/End: Complemental strand, 4571375 - 4571182
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| ||||||||| ||||| ||  |||||||  | |||||||||||||||||||| || ||| | ||||| ||||||||||| || |||||    
T  4571375 tgaatgaaatttcagatagaggcctaattgctggttggtgctcgcaagagaaagtattgaaccatccttcaattggtggtttcttgactcactgtggatg 4571276  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||||| || |||||||||| | ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||    
T  4571275 gaactcaacgaccgaaagcatatctactggagttccaatgttgtgttagccattttttgctgatcagccagcaaactgtagatatatctgcaat 4571182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 139 - 327
Target Start/End: Complemental strand, 4506255 - 4506067
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||| | || |||||||| |||||| ||||||||||||| || || ||||| ||| | |||||||||||||||||||||||||||||||    
T  4506255 gaaatttcagatagaagccttatagcaagctggtgttcacaagagaaagtgttaaatcacccttcaattggtggattcttgactcattgcggatggaact 4506156  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||| || ||||  ||||| ||| ||||||| |||| ||||||||||    
T  4506155 caaccactgaaagcatatgcgctggagtgccaatgctgtgttggccgttctttggtgatcaaccaacaaactgtagatttatttgcaat 4506067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 134 - 299
Target Start/End: Complemental strand, 3172144 - 3171979
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||| || ||| | || |||||||||||||| ||||||||    
T  3172144 tgaatgaaatttcagatagaggcctaatagcaagttggtgtccgcaagagaaagtgttgaaccatccttcaattggcggattcttgactcactgcggatg 3172045  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatca 299  Q
    |||||||||||| |||||  ||||||||||| | |||||||||||| ||||||||||||| |||||    
T  3172044 gaactcaaccacggaaagtgtatgtgctggaatgccaatgttgtgtaggccattttttgctgatca 3171979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 4592634 - 4592457
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| |||||||||  |||| || || |||||||| |||||| ||||||| |||||||| ||| | |||||||||||||||||||| |||||    
T  4592634 tgaatgaaatttcagatagaggcgtaatcgcgagctggtgtcctcaagagcaagtattaaaccacccttcaattggtggattcttgactcattgtggatg 4592535  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactg 311  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||   ||||||||| |||||||    
T  4592534 gaactcaaccactgaaagtatatgtgctggaattccaatgttgtgttggccattctttagtgatcagccaacaaactg 4592457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 4575100 - 4575000
Alignment:
Q  18 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 117  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4575100 tgaagtggcagataaatgtcatagagcttctggtatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 4575001  T
Q  118 t 118  Q
    |    
T  4575000 t 4575000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 327
Target Start/End: Complemental strand, 4457983 - 4457804
Alignment:
Q  148 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactg 247  Q
    ||||||||  ||||||||||||||||||||||||| ||||| ||||||||||| ||| |||| ||||||||||||||||| ||||| |||||||||||||    
T  4457983 gatagaggcttaatagcaagttggtgtccacaagataaagtgttgaaccacccttcaatcggaggattcttgactcattgtggatgaaactcaaccactg 4457884  T
Q  248 aaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    |||||||||| |||||||| |||||| || |||||||||| ||||  ||| ||||| |||  || |||| ||||||||||    
T  4457883 aaagcatatgcgctggagtgccaatgctgcgttggccattctttggtgataagccaacaagttgtagatttatttgcaat 4457804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 134 - 327
Target Start/End: Complemental strand, 4598574 - 4598381
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| |||||||||  || | ||||| |||||||  |||||| ||||||| ||||| || ||| | ||||||||||| ||||||||||||||    
T  4598574 tgaatgaaatttcagatagaggcttagttgcaagctggtgtctgcaagagcaagtattaaaccatccttcaattggtggattcttaactcattgcggatg 4598475  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    |||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||| || ||||||| ||| ||||| |||||||||||||||    
T  4598474 gaactcaaccactgaaagtatatgtgccggagtgccaatgttgtgttgtccctttttcgcggatcagcaagccaactgcagatatatttgcaat 4598381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 4561296 - 4561196
Alignment:
Q  18 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 117  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4561296 tgaagtggcagataaatgtcttagagcttctggtatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 4561197  T
Q  118 t 118  Q
    |    
T  4561196 t 4561196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 148 - 327
Target Start/End: Complemental strand, 4516710 - 4516531
Alignment:
Q  148 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactg 247  Q
    ||||||||  |||||||||| |||||||| ||||||||||| |||||||| || ||||| || ||||||||||||||||| ||||||||||| || |  |    
T  4516710 gatagaggcgtaatagcaagctggtgtccgcaagagaaagtgttgaaccatccttcagttggaggattcttgactcattgtggatggaactccacaatgg 4516611  T
Q  248 aaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||| ||||| ||||| ||||||||||||||||| |||||||| || |||||| |||| || |||||||||||||||    
T  4516610 aaagcatctgtgccggagtaccaatgttgtgttggcctttttttgctgagcagccaacaaattgcagatatatttgcaat 4516531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 147 - 327
Target Start/End: Complemental strand, 4493345 - 4493165
Alignment:
Q  147 agatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccact 246  Q
    ||||||||| ||||| || ||||||||||||||||||||| |  |||||||||  ||  | |||||||||||||||||||| |||||||||||||| ||     
T  4493345 agatagaggcctaattgctagttggtgtccacaagagaaactgctgaaccaccattcgattggtggattcttgactcattgtggatggaactcaactacc 4493246  T
Q  247 gaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
     ||| ||||||||| ||||| ||||||||||||||||| || |||   ||||||||| ||||||| ||||  |||||||||    
T  4493245 aaaaacatatgtgccggagtgccaatgttgtgttggcctttctttagtgatcagccaacaaactgtagattgatttgcaat 4493165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 323
Target Start/End: Complemental strand, 4568445 - 4568270
Alignment:
Q  148 gatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactg 247  Q
    |||||||| | ||||||||| |||||||| |||||| |||| ||||||||||| ||||| ||  |||||||||||||||| ||||||||||| ||    |    
T  4568445 gatagaggccaaatagcaagctggtgtccgcaagagcaagtgttgaaccacccttcagttggacgattcttgactcattgtggatggaactccacattgg 4568346  T
Q  248 aaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttg 323  Q
    ||||||| |||||  |||| |||||||| |||||||| |||||| | || |||||| || |||| |||||||||||    
T  4568345 aaagcatttgtgccagagtaccaatgttatgttggccttttttttctgagcagccaacatactgcagatatatttg 4568270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 4458386 - 4458287
Alignment:
Q  19 gaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    ||||||| ||||| |||||||||||| ||| |||| ||  ||||||||||| |||||||||||||||||||||||||| || |||| |||||||||||||    
T  4458386 gaagtggcagatagatgtcatagagcctcttctattgttatcaatacttcttatgaacttgagagtgatgttatgaatactctctactctatgttccctt 4458287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 3172533 - 3172455
Alignment:
Q  18 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaat 96  Q
    |||||| |||||||||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  3172533 tgaagtaggagataaatgtcacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat 3172455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 257
Target Start/End: Original strand, 4299555 - 4299673
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| | ||||||| ||||  ||||| | ||||||||||||  ||||| |||||||||| ||| | ||||||||||||||||| || ||||||||||    
T  4299555 gaaatttcaaatagaggcctaaccgcaagctagtgtccacaagaacaagtactgaaccacccttcaattggtggattcttgactcactgtggatggaact 4299654  T
Q  239 caaccactgaaagcatatg 257  Q
    |||||| ||||||||||||    
T  4299655 caaccattgaaagcatatg 4299673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 4470584 - 4470495
Alignment:
Q  29 ataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    |||||||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||    
T  4470584 ataaatgtcaaagagcttctgctattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattccctt 4470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 4481486 - 4481385
Alignment:
Q  17 atgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 116  Q
    ||||||||  |||||||||||| ||||| |||||| | ||  ||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||    
T  4481486 atgaagtgacagataaatgtcaaagagcatctgcttttgttatcaatacttcttatgaacttgagagtgatgttatgaattctctctattctatattccc 4481387  T
Q  117 tt 118  Q
    ||    
T  4481386 tt 4481385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 4503724 - 4503806
Alignment:
Q  17 atgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgct 99  Q
    ||||||||| |||||||||||| ||||| || || || || ||||||||||||||||||||||||||||||| ||||||||||    
T  4503724 atgaagtggcagataaatgtcaaagagcctcagccattgttttcaatacttctaatgaacttgagagtgatgctatgaatgct 4503806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 4514479 - 4514561
Alignment:
Q  36 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    ||||||||||||||||||  | || |||||||||||||| |||||||||||||||||||||||| | ||||||||| ||||||    
T  4514479 tcatagagcttctgctatttttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctccctt 4514561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 4299189 - 4299261
Alignment:
Q  46 tctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    |||||||| || || ||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4299189 tctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttccctt 4299261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 4266547 - 4266606
Alignment:
Q  59 tcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  4266547 tcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttccctt 4266606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 4391885 - 4391996
Alignment:
Q  163 gcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctg 262  Q
    ||||| ||||||||  ||||| |||||||||||||||| | | |  |||||||||| || ||||| ||||| |||||| ||| ||||||||| ||| ||     
T  4391885 gcaagatggtgtccgaaagagcaagtattgaaccacccttgaatttgtggattcttaacgcattgtggatgaaactcacccattgaaagcatttgttcta 4391984  T
Q  263 gagttccaatgt 274  Q
    ||||||||||||    
T  4391985 gagttccaatgt 4391996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 4461906 - 4461815
Alignment:
Q  27 agataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    |||||||||||| |||||||||||| |  | || ||||||||||||||||| || |||||| |||||||||   |||||| ||| |||||||    
T  4461906 agataaatgtcacagagcttctgctgttattttgaatacttctaatgaactcgaaagtgatattatgaatgaactctattttatattccctt 4461815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 4506631 - 4506568
Alignment:
Q  36 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgct 99  Q
    ||||||||| ||| |||| ||  |||||||||||||||||||||||||| ||||| ||||||||    
T  4506631 tcatagagcctcttctattgttctcaatacttctaatgaacttgagagtaatgttctgaatgct 4506568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 4489735 - 4489776
Alignment:
Q  58 ttcaatacttctaatgaacttgagagtgatgttatgaatgct 99  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  4489735 ttcaatacttctaatgaacttgagagtgatgctatcaatgct 4489776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 4602541 - 4602484
Alignment:
Q  61 aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    |||||||  |||||||||||||||||||| ||||||||  | ||||||||||||||||    
T  4602541 aatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttccctt 4602484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 4259547 - 4259594
Alignment:
Q  71 atgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    ||||||||||||||||||| |||||||   ||||||||||||||||||    
T  4259547 atgaacttgagagtgatgtaatgaatgtgctctattctatgttccctt 4259594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 4255979 - 4256049
Alignment:
Q  36 tcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctatt 106  Q
    ||||||||| |||||||| || || || |||| ||||||||||||||| |||||  |||||||| ||||||    
T  4255979 tcatagagcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgctctctatt 4256049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 4484163 - 4484201
Alignment:
Q  58 ttcaatacttctaatgaacttgagagtgatgttatgaat 96  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  4484163 ttcaatacttttaatgaactagagagtgatgttatgaat 4484201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 4568805 - 4568765
Alignment:
Q  49 gctatggtattcaatacttctaatgaacttgagagtgatgt 89  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  4568805 gctattgttttcaatacttataatgaacttgagagtgatgt 4568765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 139 - 323
Target Start/End: Complemental strand, 1281512 - 1281328
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  1281512 gaaatttcagatagaggcctaatagcaagttggtgtccacaagagaaagtgttgaaccacccttcaatcggtggattcttgactcattgcggatggaact 1281413  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttg 323  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||| |||| ||||||    
T  1281412 caaccactgaaagcatatgtgctggagtgccaatgttgtgttggccattttttgctgatcagccaacagactgtagatttatttg 1281328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 117 - 323
Target Start/End: Complemental strand, 1674647 - 1674440
Alignment:
Q  117 ttttctcatctgatttt-tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    |||| |||||||| ||| |||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||| ||| |||| |||||    
T  1674647 ttttgtcatctgagtttatgaaagaaatttcagatagaggcctaatatcaaattggtgtccacaagagaaagtgttgaaccacccttcaatcggcggatt 1674548  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaaga 315  Q
    |||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||    
T  1674547 cttgacacactgcggatggaactcaaccactgaaagcatatgcgctggagtgccaatgttgtgttggccattttttgctgatcagccaacaaactgtaga 1674448  T
Q  316 tatatttg 323  Q
    | ||||||    
T  1674447 tttatttg 1674440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 147 - 327
Target Start/End: Original strand, 16686009 - 16686189
Alignment:
Q  147 agatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccact 246  Q
    ||||||| | ||||| || || ||||| || |||||| ||||||| ||||| || ||| ||||||||||||| |||||||| ||||||||||||||||||    
T  16686009 agatagaagcctaatcgcgagctggtgcccgcaagagcaagtattaaaccatccttcaatcggtggattcttaactcattgtggatggaactcaaccact 16686108  T
Q  247 gaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  16686109 gaaagtatatatgctggagttccaatgttgtgttggccattttttgctgatcagccagcaaaatgcagatatatttgcaat 16686189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 134 - 326
Target Start/End: Original strand, 20863572 - 20863764
Alignment:
Q  134 tgaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatg 233  Q
    |||| ||||||| ||||||||| ||||| || |||||||||||||||||||| || |||||||| || ||| | ||||||||  | |||||||| |||||    
T  20863572 tgaatgaaatttcagatagaggcctaatcgcgagttggtgtccacaagagaaggtgttgaaccatccttcaattggtggatttctaactcattgtggatg 20863671  T
Q  234 gaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaa 326  Q
    ||||||||||| ||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||  ||||||| ||||| ||||||||    
T  20863672 gaactcaaccattgagagcatatgtgctggagtgccaatgttgtgctggccattttttgctgatcagccgacaaactgcagatacatttgcaa 20863764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 20863183 - 20863283
Alignment:
Q  18 tgaagtgggagataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccct 117  Q
    |||||| | ||||| || ||| ||||| |||||||| || ||||||||||  ||||| |||||||||||||||||||||| | |||||||||||||||||    
T  20863183 tgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttccct 20863282  T
Q  118 t 118  Q
    |    
T  20863283 t 20863283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 117 - 324
Target Start/End: Complemental strand, 24103420 - 24103212
Alignment:
Q  117 ttttctcatctgatttttg-aaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggatt 215  Q
    |||| |||||||||||||  |||||| ||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||  | ||||||||    
T  24103420 ttttgtcatctgatttttttaaagaagtttcagatagaggactaatagcaagttggtgtccacaagataaagtgttaaaccacccttcgattggtggatt 24103321  T
Q  216 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaaga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||| ||| ||||||| |||    
T  24103320 cttgactcattgcggatggaactcaaccactgaaagcatatgtgctggagtgccaatgttgtgttggccattctttggtgatcaaccaacaaactgtaga 24103221  T
Q  316 tatatttgc 324  Q
    | |||||||    
T  24103220 tttatttgc 24103212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 135 - 323
Target Start/End: Original strand, 27999829 - 28000017
Alignment:
Q  135 gaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatgg 234  Q
    ||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||| ||| || | || ||||||||||| |||||||||    
T  27999829 gaaagaaatttcagatagaggcctaatatcaaattggtgtccacaagagaaagttttgaaccacccttcaatcagcgggttcttgactcactgcggatgg 27999928  T
Q  235 aactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttg 323  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||| ||||||| |||| ||||||    
T  27999929 aactcaaccaccgaaagcatatgcgctggagtgccaatgttgtgttggtcattttttgctgatcagccaacaaactgtagatttatttg 28000017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 24103776 - 24103691
Alignment:
Q  33 atgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccctt 118  Q
    |||||| ||||| ||| |||| ||  ||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  24103776 atgtcacagagcctcttctattgttatcaatacttcatatgaacttgagagtgatgttatgaatgctctctactctatgttccctt 24103691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 24107114 - 24107065
Alignment:
Q  71 atgaacttgagagtgatgttatgaatgctttctattctatgttccctttt 120  Q
    ||||||||||||||||||| |||||| |  ||||||||||||||||||||    
T  24107114 atgaacttgagagtgatgtaatgaatacgctctattctatgttccctttt 24107065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 139 - 310
Target Start/End: Original strand, 4420 - 4591
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| ||||| || || ||||||||||||||| ||||| |||||||||| ||| | |||||||||||||||||||||||||||||||    
T  4420 gaaatttcagatagaggcctaattgcgagctggtgtccacaagagcaagtactgaaccacccttcaattggtggattcttgactcattgcggatggaact 4519  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaact 310  Q
    |||||| ||||||||||||||  ||||| ||||||||||||||||||||||| || ||||||||| ||||||    
T  4520 caaccattgaaagcatatgtgtaggagtgccaatgttgtgttggccatttttcgccgatcagccaacaaact 4591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 139 - 326
Target Start/End: Original strand, 3453 - 3640
Alignment:
Q  139 gaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaact 238  Q
    ||||||| ||||||||| |||||  |||| ||||||||||||||| ||||| ||| |||||| ||| | |||||||||||||||||||| |||||||| |    
T  3453 gaaatttcagatagaggcctaatcacaagctggtgtccacaagagcaagtactgatccacccttcaattggtggattcttgactcattgtggatggaatt 3552  T
Q  239 caaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaa 326  Q
    ||||||||||||||||||| |||||||| |||||| | ||||||||||| ||||  ||||||||| ||||||| |||| |||||||||    
T  3553 caaccactgaaagcatatgcgctggagtaccaatgctttgttggccattctttggtgatcagccaacaaactgtagatttatttgcaa 3640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 3067 - 3156
Alignment:
Q  27 agataaatgtcatagagcttctgctatggtattcaatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttccc 116  Q
    |||| ||| ||| ||||||||||| || || || || |||| |||||||||||||||||||||  |||||||  || | |||||||||||    
T  3067 agatcaatttcacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgctccactctatgttccc 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 135 - 327
Target Start/End: Complemental strand, 3086822 - 3086630
Alignment:
Q  135 gaaagaaatttaagatagaggactaatagcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatgg 234  Q
    ||||||||||| ||||||||| ||||| ||||| |||||||| |||||| |||||||||| ||||| ||| | |||||||||||||||||||| ||||||    
T  3086822 gaaagaaatttcagatagaggtctaatcgcaagctggtgtccgcaagagcaagtattgaatcacccttcaattggtggattcttgactcattgtggatgg 3086723  T
Q  235 aactcaaccactgaaagcatatgtgctggagttccaatgttgtgttggccattttttgcagatcagccagcaaactgaagatatatttgcaat 327  Q
    ||||||||   ||||||| ||  ||||||||| |||||||||||||||||||||| || |||||| |||  |||||| |||||||| ||||||    
T  3086722 aactcaacggttgaaagcgtacttgctggagtgccaatgttgtgttggccattttatggagatcaaccaataaactgtagatatatctgcaat 3086630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 290
Target Start/End: Original strand, 3443 - 3569
Alignment:
Q  163 gcaagttggtgtccacaagagaaagtattgaaccacccatcagtcggtggattcttgactcattgcggatggaactcaaccactgaaagcatatgtgctg 262  Q
    ||||| ||||||||  ||||| |||| ||||||||||| | ||| ||||||||||| |||||||| |||||||||||||||| ||||||||| ||| |||    
T  3443 gcaagatggtgtccgtaagagcaagtgttgaaccaccctt-agttggtggattcttaactcattgtggatggaactcaaccattgaaagcatttgttctg 3541  T
Q  263 gagttccaatgttgtgttggccattttt 290  Q
    ||||||||||| || |||||||||||||    
T  3542 gagttccaatgctgcgttggccattttt 3569  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 1351056 - 1351098
Alignment:
Q  146 aagatagaggactaatagcaagttggtgtccacaagagaaagt 188  Q
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T  1351056 aagatagaggactaatggtaggttggtgtccacaagagaaagt 1351098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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