View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3174_low_7 (Length: 338)
Name: NF3174_low_7
Description: NF3174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3174_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 3095829 - 3096123
Alignment:
| Q |
17 |
caaagagacctttaatcgtttaagccgataatttcacaagtcaattgtgagataatttctaattataatactccctcttctggtattaattctccactcc |
116 |
Q |
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| T |
3095829 |
caaagagacctttaatcgtttaagccgatgatttcacaagtcaattgtgagataatttctagttataatactccctcttctggtattaattctcca---- |
3095924 |
T |
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| Q |
117 |
tattaattttccacttcttttcttttaatcggttaaggtgaagatggatttcacactagaccttaacatatctgattttcaacaatgatgaaaaattgaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3095925 |
-------------cttcttttcttttaatcggttaaggtgaagatggatttcacactagaccttaacatatctgattttcaacaatgatgaaaaattgaa |
3096011 |
T |
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| Q |
217 |
cgacatatttgatgggtttgagtatccccgtttcatccccatcatcacaatcaaatca--nnnnnnnnaataaaaaataaattttaccagccccaaacgc |
314 |
Q |
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| T |
3096012 |
caacatatttgatgggtttgagtatccccgtttcgtccccatcatcacaatcaaatcattttttttttaataaaaaagaaattttaccagccccaaacgc |
3096111 |
T |
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