View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_high_1 (Length: 836)
Name: NF3175_high_1
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 436 - 627
Target Start/End: Complemental strand, 24850489 - 24850298
Alignment:
| Q |
436 |
gacaacgcactcaaggttagtgttgatgacgtgaacaatggagaatatgctctgaaggtgacgactgtgaaggcaaataacacaacggcggagcaggcac |
535 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24850489 |
gacaaggcactcaaggttagtgttgatgacgtgaacaatggagaatatgctctgaaggtgacgactgtgaaggcaaataacacaacggcggagcaggcac |
24850390 |
T |
|
| Q |
536 |
acactgcagctgtgctgttttctcaacctgaagcagctgtgcttcgtgcatcgggagaaaaactcctttcccatatcagatcaagaatctga |
627 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24850389 |
acactgcagctgtgctgttgtctcaacctgaagcagctgtgcttcgtgaattgggagaaaaactcctttcccatatcagatcaagaatctga |
24850298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 652 - 836
Target Start/End: Complemental strand, 24850276 - 24850092
Alignment:
| Q |
652 |
aagtttggaggttggatattagtcaagttaccaatcgaataaaataccactccagaatcagctgtgtttctactaatttttgaattttgacaaataaatt |
751 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24850276 |
aagtttggaggttggacattagtcaagttaccaatcgaataaaataccactccagaatcagctgtgtttctactaatttttgaattttgacaaataaatt |
24850177 |
T |
|
| Q |
752 |
tacttagatcagttactatgttgtatcagatcaaggtagcatgnnnnnnnagaggatctgcaaggtagcatgttcctttgcttct |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
24850176 |
tacttagatcagttactatgttgtatcagatcaaggtagcatgtttttttagaggatctgcaaggtagcatgttcctttggttct |
24850092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 340 - 437
Target Start/End: Complemental strand, 24850633 - 24850536
Alignment:
| Q |
340 |
gttataaaggaaatgactctcaatatcgaaactcaaaaacacaactttcttggataagctttcttgcgaattaatttttattaatcttatccaggtga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24850633 |
gttataaaggaaatgactctcaatatcgaaactcaaaaacacaactttcttggataagctttcttgcgaattaatttttattaatcttatccaggtga |
24850536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University