View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_13 (Length: 354)
Name: NF3175_high_13
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 25014971 - 25014626
Alignment:
| Q |
13 |
aatatgacagagtaagtccctaatatccgattaacacttccgtagttttatatcgaggtatttaaccacatggttgaaatcaagtggttagtgagttcga |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25014971 |
aatatgacagagtaagtctctaatatccgattaacacttccgtagttttatatcgaggtatttaaccacatggttgatatcaagtggttagtgagttcga |
25014872 |
T |
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| Q |
113 |
cg------------------aagtttgaatcctggtaggaataatcattgaccagactttacctacctcctggccgaactttggagttcagataaccagg |
194 |
Q |
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|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25014871 |
cgaatcattcagaagaacctaagtttgaatcctggtaggaacaatcattgaccagactttacctacctcctggccgaactttggagttcggataaccagg |
25014772 |
T |
|
| Q |
195 |
attcaatattnnnnnnnntattgatattgcggcctaaattgtagttgcaggtctttttcaaattccgcggtttaacctaatgagtgaaannnnnnnggtt |
294 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25014771 |
attcaatattaaaaaaaatattgatattgcggcctaaattgcagttgcaggtctttttcaaattccgcggtttaacctaatgagtgaaatttttttagtt |
25014672 |
T |
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| Q |
295 |
ctttaatttctctattgtggaataatgctaatgttaagtgttaaat |
340 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25014671 |
ctttaatttctctatagtggaataatgctaatgttaagtgttaaat |
25014626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 12662680 - 12662586
Alignment:
| Q |
13 |
aatatgacagagtaagtccctaatatccgattaacacttccgtagttttatatcgaggtatttaaccacatggttgaaatcaagtggttagtgagttc |
110 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||||||||| |
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| T |
12662680 |
aatatgacagagtaagtccctaaaatccaattaacacttcc---attttaaatcgaggtatttaactaagtggttgatctcaagtggttagtgagttc |
12662586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22979436 - 22979396
Alignment:
| Q |
13 |
aatatgacagagtaagtccctaatatccgattaacacttcc |
53 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| |
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| T |
22979436 |
aatatgacagagtaagtccctaaaatccaattaacacttcc |
22979396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 23808968 - 23809008
Alignment:
| Q |
13 |
aatatgacagagtaagtccctaatatccgattaacacttcc |
53 |
Q |
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||||||||||||||||||||||| |||| |||||||||||| |
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| T |
23808968 |
aatatgacagagtaagtccctaaaatccaattaacacttcc |
23809008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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