View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_14 (Length: 353)
Name: NF3175_high_14
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 52477450 - 52477788
Alignment:
| Q |
1 |
ttcattgtttagttttgaatatagtgaaaaactgaaagtgttttctgaaatcaaagtttgcaagatcagagaagtgtcttgcgttttgttttgaagatgc |
100 |
Q |
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| T |
52477450 |
ttcattgtttagtttttaatatagtgaaaaactgaaagtgttttctgaaatcaaagtttgcaagatcagagaagtgtcttgcgttttgttttgaagatgc |
52477549 |
T |
|
| Q |
101 |
aattgtgactagaagtgataaggaacataagttccaaggacaaaaccagcatgagagtcagagtcaaaaataaatcaagtgaaataacggatttggttac |
200 |
Q |
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| T |
52477550 |
aattgtgactagaagtgataaggaacataagttccaaggacaaaaccagcatgagagtcag--tcaaaaataaatcaagtgaaataacggatttggttac |
52477647 |
T |
|
| Q |
201 |
cggaggcggcgaagtcggacaaattcatagacacctttggtactgttgatggcagccatgaagtgcagtgtctctcctatgaagggtaatcctcgatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52477648 |
cggaggcggcgaagtcggacaaattcatagacacctttggtactgttgatggcagccatgaagtgcagtgtctctcctatgaagggtaatcctcgatttc |
52477747 |
T |
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| Q |
301 |
ccggaggaatgccaacactacaactgcacttgttgtttttg |
341 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52477748 |
ccggaggaatgccaacactacgactgcacttgttgtttttg |
52477788 |
T |
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