View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_high_18 (Length: 317)

Name: NF3175_high_18
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_high_18
NF3175_high_18
[»] chr7 (1 HSPs)
chr7 (10-317)||(10032663-10032972)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 10032663 - 10032972
Alignment:
Q  10 aataatatatgaacgagtagcacattattaacttcaatttccgatcattatagcataaagggggccaatgatatgagttttattggccactaaaacacaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032663 aataatatatgaacgagtagcacattattaacttcaatttccgatcattatagcataaagggggccaatgatatgagttttattggccactaaaacacaa 10032762  T
Q  110 tgataagtctcatcaaccatatcttgcggtatttgtttattccaagtgctgttcatcttttattatagctttatagccactcacaaaagttaattaattc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032763 tgataagtctcatcaaccatatcttgcggtatttgtttattccaagtgctgttcatcttttattatagctttatagccactcacaaaagttaattaattc 10032862  T
Q  210 gttgga--ttgactacaaaagaaaacgatgcctttcttatctagaaaaatccacatataggccccggatataaaggagaacatatgttaaagtaaattat 307  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10032863 gttggattttgactacaaaagaaaacgatgcctttcttatctagaaaaatccacatataggccccggatataaaggagaacatatgttaaagtaaattat 10032962  T
Q  308 tgatgacttt 317  Q
    ||||||||||    
T  10032963 tgatgacttt 10032972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University