View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_high_19 (Length: 314)

Name: NF3175_high_19
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_high_19
NF3175_high_19
[»] chr7 (1 HSPs)
chr7 (2-300)||(10033101-10033399)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 300
Target Start/End: Original strand, 10033101 - 10033399
Alignment:
Q  2 ttggaatttattcttagagggatagacaatgaataattgggctcctcctctcatagctgcagctctattttggctattatcaccaggaatgatttttcag 101  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10033101 ttggaattgattcttagaggtatagagaatgaataattgggctcctcctctcatagctgcagctttattttggctattatcaccaggaatgatttttcag 10033200  T
Q  102 cttccagggaagaattcaccattggagtttatgaatatgaagacaactattgcatcaatttttgtacacactgttctttatggtttgcttctcatgttgt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033201 cttccagggaagaattcaccattggagtttatgaatatgaagacaactattgcatcaatttttgtacacactgttctttatggtttgcttctcatgttgt 10033300  T
Q  202 tctttgttgttcttgatcttcatctttatatcacttgaagtagatcaagtgataataataatatatgttacttttgatttttcctttcatacttgtttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033301 tctttgttgttcttgatcttcatctttatatcacttgaagtagatcaagtgataataataatatatgttacttttgatttttcctttcatacttgtttt 10033399  T

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