View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_20 (Length: 313)
Name: NF3175_high_20
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 21533851 - 21534159
Alignment:
| Q |
1 |
tctccaaaacaaaacagcaaagaattacatataatcaacttcttttttaaaaataaaaattaacgtcagatgtggcctgtctatcttaggaataaaacta |
100 |
Q |
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| T |
21533851 |
tctccaaaacaaaacagcaaagaattacatataatcaacttcttttttaaaaataaaaattaacgtcagatgtggcctgtctatcttaggaataaaacta |
21533950 |
T |
|
| Q |
101 |
ttgtgttgtgaagacgaacttcaaatcagaagaccgtcttttttgccacattcataggtctggaatgaagttaaggccttaataatcagtcgtccttact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21533951 |
ttgtgttgtgaagacgaacttcaaatcagaagaccgtcttttttgccacattcataggtctggaatgaagttaaggccttaataatcagtcgtccttact |
21534050 |
T |
|
| Q |
201 |
gagtgtgaagaaaattaaatcatacaaattggagcacacaactctctcctgaatctcatgtgatttctgtcacttctagatacctctccatgcttataac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21534051 |
gagtgtgaagaaaattaaatcatacaaattggagcacacaactctctcctgaatctcatgtgatttctgtcacttctagatacctctccatgcttataac |
21534150 |
T |
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| Q |
301 |
tgatgatat |
309 |
Q |
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||||||||| |
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| T |
21534151 |
tgatgatat |
21534159 |
T |
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