View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_high_22 (Length: 301)

Name: NF3175_high_22
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_high_22
NF3175_high_22
[»] chr6 (1 HSPs)
chr6 (16-301)||(18033173-18033460)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 18033460 - 18033173
Alignment:
Q  16 acataaaccctaataagtgatatacaattcagcacagaagtggaacaaaatagattagcaactagaaaaacccgtccgaaataggtatatcaaccaacac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18033460 acataaaccctaataagtgatatacaattcagcacagaagtggaacaaaatagattagcaactagaaaaacccgtccgaaataggtatatcaaacaacac 18033361  T
Q  116 ccaaaacaaacactacctagtacaatccggagaacccacgtaagagcacgaaactagtttgcnnnnnnncagtttaagtgagtgtttagaccatttaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||       |||||||||||||||||||||||||||||||    
T  18033360 ccaaaacaaacactacctagtacaatccggagaacccacgtaagagcacaaaactggtctgcaaaaaagcagtttaagtgagtgtttagaccatttaagt 18033261  T
Q  216 tggcgtatgaatcatttgtcaccacaaaaaagcaatccatgatccatcaa--ctctgcaaaacaacaacattaatcagccattccatt 301  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  18033260 tagcgtatgaatcatttgtcaccacaaaaaaacaatccatgatccatcaactctctgcaaaacaacaacattaatcagccattccatt 18033173  T

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