View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_30 (Length: 252)
Name: NF3175_high_30
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 48695263 - 48695019
Alignment:
| Q |
1 |
agttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatag |
100 |
Q |
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| T |
48695263 |
agttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatag |
48695164 |
T |
|
| Q |
101 |
tttcctctattaaaaagatgagggaaacataataagctttattgctgcaaaaactagctaattagataaagggagatcttaatgattgaatcaaacaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48695163 |
tttcctctattaaaaagatgagggaaacataataagctttattgctacaaaaactaattaattagataaagggagattttaatgattgaatcaaacaatc |
48695064 |
T |
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| Q |
201 |
aacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
245 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695063 |
aacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
48695019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3455140 - 3455251
Alignment:
| Q |
1 |
agttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatag |
100 |
Q |
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|||||||| || | ||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| || ||| ||||||||||| | |
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| T |
3455140 |
agttttgttgtcgtaagaatttcagccatgctaacaacaccagaaagcggtgatcttatctcatgagacattgttgccaacatttgttttgctctcattg |
3455239 |
T |
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| Q |
101 |
tttcctctatta |
112 |
Q |
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| |||||||||| |
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| T |
3455240 |
tctcctctatta |
3455251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3479505 - 3479616
Alignment:
| Q |
1 |
agttttgtggtggaaagaatttcagccatgctaacaacaccagaaagtggagatcttatctcatgtgacattgttgccagcacttgctttgctctcatag |
100 |
Q |
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|||||||| || | |||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| || ||| ||||||||||| | |
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| T |
3479505 |
agttttgttgtagtaagaattttggccatgctaacaacatcagaaagtggtgatcttatctcatgagacattgttgccaacatttgttttgctctcattg |
3479604 |
T |
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| Q |
101 |
tttcctctatta |
112 |
Q |
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| |||||||||| |
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| T |
3479605 |
tctcctctatta |
3479616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 3455350 - 3455394
Alignment:
| Q |
201 |
aacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
245 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3455350 |
aacctgtaatgtgaatggttttattaagttctgtttcctttgctt |
3455394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 3479715 - 3479759
Alignment:
| Q |
201 |
aacctgtaatgtgaatggttttattcagttctgtttcctttgctt |
245 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3479715 |
aacctgtaatgtgaatggttttattaagttctgtttcctttgctt |
3479759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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