View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_39 (Length: 242)
Name: NF3175_high_39
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 5391703 - 5391914
Alignment:
| Q |
14 |
cagagacatcgcattgaatgtagtgaacatacttatcagcgttccacgtt-ggttgtggacggcgagccacgccataaaccttccatggaccacctggtg |
112 |
Q |
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|||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391703 |
cagagacatcgcattgaatgtagtcaacataattatcagtgttccacgtttggttgtggacggcgagccacgccataaaccttccatggaccacctggtg |
5391802 |
T |
|
| Q |
113 |
tgtcgtcgagaggtaaaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5391803 |
tgtcgtcgagaggtaaaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaa |
5391902 |
T |
|
| Q |
213 |
ttctgtaatctg |
224 |
Q |
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|||||||||||| |
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| T |
5391903 |
ttctgtaatctg |
5391914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 5395514 - 5395724
Alignment:
| Q |
14 |
cagagacatcgcattgaatgtagtgaacatacttatcagcgttccacgttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5395514 |
cagagacatcgcattgaatgtagtgaacatacttatcagcgttccacgttggttgtggacggcgagccacaccataaaccttccatggaccacctggtgt |
5395613 |
T |
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| Q |
114 |
gtcgtcgagaggtaaaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaat |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
5395614 |
gtcgtcgagaggtagaatctctgctaggctatttcccacaattcccgtcacgcctataatcaatgctacattttggaagcttcctggtgcttccttgaat |
5395713 |
T |
|
| Q |
214 |
tctgtaatctg |
224 |
Q |
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||||||||||| |
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| T |
5395714 |
tctgtaatctg |
5395724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 5401663 - 5401873
Alignment:
| Q |
16 |
gagacatcgcattgaatgtagtgaacatacttatcagcgttccacgttggttgtggacggcgagccacgccataaaccttccatggaccacctggtgtgt |
115 |
Q |
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|||||||| || ||||| ||||||||| |||||| | |||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
5401663 |
gagacatcacactgaatatagtgaacagggttatcaacattccacattggtcgtggacggcgagccacgccataaaccttccatggtccaactggtgtgt |
5401762 |
T |
|
| Q |
116 |
cgtcgagaggtaaaatctctgctaggctatttcccacaattcccgtcacgcctataattaatgctacattttggaagcttcgtggtgattccttgaattc |
215 |
Q |
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| | ||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| | ||||||||| ||||||||||| |
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| T |
5401763 |
cttttagaggtaggatctctgctagactatttcccacaattcctgttacgcctataatcaatgctacattttggacgtttcgtggtgcttccttgaattt |
5401862 |
T |
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| Q |
216 |
tgtaatctgtg |
226 |
Q |
| |
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||| ||||||| |
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|
| T |
5401863 |
tgtgatctgtg |
5401873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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