View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_40 (Length: 240)
Name: NF3175_high_40
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 45684255 - 45684480
Alignment:
| Q |
1 |
tactcaagttatcaatacaaatgaaacaacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaataaattt |
100 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45684255 |
tactcaagttatcaatacagatgaaacaacattttattgatacattcttctttgtttctgaattatttatgcaatacaaaattacgacagaaataaattt |
45684354 |
T |
|
| Q |
101 |
aatagttgattgaaaactaaattcat--attaaaatcatttgtagaagttaaaaactacaaattctaacttcaaattaaaataaattttttgaagcaaaa |
198 |
Q |
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| T |
45684355 |
aatagttgattgaaaactaaattcataaattaaaatcatttgtagaagttaaaaactacaaattctaacttcaaattaaaataaa-tttttgaagcaaaa |
45684453 |
T |
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| Q |
199 |
ccatttttgccctagaacgtccaaagt |
225 |
Q |
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|||||||||||||||||| |||||||| |
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| T |
45684454 |
ccatttttgccctagaacatccaaagt |
45684480 |
T |
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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 18151620 - 18151713
Alignment:
| Q |
1 |
tactcaagttatcaatacaaatgaaacaacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaat |
94 |
Q |
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| T |
18151620 |
tactcaagttatcaatacagacgaagcaacatttcattgatacattcttctttgtttctgaattctttatgcaattcgaaattacgacagaaat |
18151713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 25318874 - 25318820
Alignment:
| Q |
130 |
aaaatcatttgtagaagttaaaaactacaaattctaacttcaaattaaaataaat |
184 |
Q |
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| T |
25318874 |
aaaatcaattgtagaagtcaaaaactacaaattttaacttcaagttataataaat |
25318820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 16773866 - 16773773
Alignment:
| Q |
1 |
tactcaagttatcaatacaaatgaaacaacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaat |
94 |
Q |
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||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
16773866 |
tactcaagttatcaatacagacgaagcaacatttcattgatacattcttctttgtttctgaattctttatgcaattcgaaattacgacagaaat |
16773773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28372770 - 28372677
Alignment:
| Q |
1 |
tactcaagttatcaatacaaatgaaacaacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaat |
94 |
Q |
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|
||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
28372770 |
tactcaagttatcaatacagacgaagcaacatttcattgatacattcttctttgtttctgaattctttatgcaattcgaaattacgacagaaat |
28372677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28380592 - 28380499
Alignment:
| Q |
1 |
tactcaagttatcaatacaaatgaaacaacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaat |
94 |
Q |
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||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
28380592 |
tactcaagttatcaatacagacgaagcaacatttcattgatacattcttctttgtttctgaattctttatgcaattcgaaattacgacagaaat |
28380499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 13978460 - 13978530
Alignment:
| Q |
28 |
aacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaataaat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| |
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| T |
13978460 |
aacatttcattgatacattcttctttgtttctgaattttttatgcaattcgaaattacgacataaataaat |
13978530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 52305915 - 52305985
Alignment:
| Q |
27 |
caacatttcattgatacattcttctttgtttctgaattatttatgcaatacgaaattacgacagaaataaa |
97 |
Q |
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|||||| | |||||||| || ||||||||||||||||| |||||| ||| ||||||| ||||||| |||| |
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| T |
52305915 |
caacatattattgatacgtttttctttgtttctgaattctttatgtaatttgaaattaagacagaagtaaa |
52305985 |
T |
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