View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_high_5 (Length: 576)
Name: NF3175_high_5
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Original strand, 48695269 - 48695820
Alignment:
| Q |
8 |
aggagcagagacagcttttggatgtcatgttgtcatctggagatttggttcttcaactcataaatgacatacttgatctttccaaggttgaatcaggttg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695269 |
aggagcaaagacagcttttggatgtcatgttgtcatctggagatttggttcttcaactcataaatgacatacttgatctttccaaggttgaatcaggttg |
48695368 |
T |
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| Q |
108 |
gaaatctgtccttgtttccaatccatattaggacctgtttagattgaattatttaaacgtatcaattggtataagttgttttcagcgtatcagatgttca |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48695369 |
gaaatctgtccttgtttccaatccatattaggacctgtttagattgaattatttaaacgtatcaattggtataagttgttttcagcgtatcggatgttca |
48695468 |
T |
|
| Q |
208 |
taagttgttttcaacatattcctgtaaggtctctaagatagcttatgacagcagcttatagtttaaatgacaacagtttaagtttctattatactttgtt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695469 |
caagttgttttcaacatattcctgtaaggtctctaagatagcttatgacagcagcttatagtttaaatgacaacagtttaagtttctattatactttgtt |
48695568 |
T |
|
| Q |
308 |
ataggaatatcgtatacataatcacttatgtgctaagtgtctaatctatacgcgcttaattttatgtttattcaaacatgcctcagtgatacataaacta |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
48695569 |
ataggaatatcgtatacataatcacttatgtgctaagtgtctaatctatacgcgcttaattttatgtatattcaaacatgcctcaatgatacataaacta |
48695668 |
T |
|
| Q |
408 |
gatgattatatagactgattcctacctcccaaaatctgcattatgtgtaggagttatgaagttggaagctaccaaatttcgacctagagaggtagtaaag |
507 |
Q |
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| T |
48695669 |
gatgattatatacactgattcctacctcccaaaatctgcattatgtgtaggagttatgaagttggaagctaccaaatttcgacctagagaggtagtaaag |
48695768 |
T |
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| Q |
508 |
catgtgcttcagacagctgcggcatcattgcagaaaatattaaccatagaag |
559 |
Q |
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| T |
48695769 |
catgtgcttcagacagccgcagcatcattgcagaaaatattaaccatagaag |
48695820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 47319306 - 47319346
Alignment:
| Q |
232 |
taaggtctctaagatagcttatgacagcagcttatagttta |
272 |
Q |
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|||| |||||||||||| |||||||| |||||||||||||| |
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| T |
47319306 |
taagctctctaagatagattatgacaacagcttatagttta |
47319346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 3455132 - 3455028
Alignment:
| Q |
10 |
gagcagagacagcttttggatgtcatgttgtcatctggagatttggttcttcaactcataaatgacatacttgatctttccaaggttgaatcaggttgga |
109 |
Q |
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||||| ||||||||||||||||||||||| || || |||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||| || |
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| T |
3455132 |
gagcaaagacagcttttggatgtcatgttatcttcaggagatttggttcttcaacttataaatgatatacttgatctttccaaggtcgagtcaggttaga |
3455033 |
T |
|
| Q |
110 |
aatct |
114 |
Q |
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||||| |
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| T |
3455032 |
aatct |
3455028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 448 - 545
Target Start/End: Complemental strand, 3454914 - 3454817
Alignment:
| Q |
448 |
ttatgtgtaggagttatgaagttggaagctaccaaatttcgacctagagaggtagtaaagcatgtgcttcagacagctgcggcatcattgcagaaaat |
545 |
Q |
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|||||| |||||| |||||| ||||||||||| ||||| | || ||||||||||||| |||||| || ||||||||||| ||| ||||||||||||| |
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| T |
3454914 |
ttatgtataggagctatgaaattggaagctacaaaattcaggccaagagaggtagtaaggcatgtactccagacagctgcagcaccattgcagaaaat |
3454817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 206 - 316
Target Start/End: Complemental strand, 12975407 - 12975298
Alignment:
| Q |
206 |
cataagttgttttcaacatattcctgtaaggtctctaagatagcttatgacagcagcttatagtttaaatgacaacagtttaagtttctattatactttg |
305 |
Q |
| |
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||||||||||||||||| |||||| |||| |||| |||||||||||||| |||||||||| ||| |||| |||| ||| | ||| | |||| ||||| |
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| T |
12975407 |
cataagttgttttcaacttattcca-taagctctccaagatagcttatgaacacagcttatagcttatatgaaaacaatttgattttattttattctttg |
12975309 |
T |
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| Q |
306 |
ttataggaata |
316 |
Q |
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||||||||||| |
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| T |
12975308 |
ttataggaata |
12975298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 34035982 - 34035929
Alignment:
| Q |
202 |
tgttcataagttgttttcaacatattcctgtaaggtctctaagatagcttatga |
255 |
Q |
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||||||||||||||||||||| |||| | ||| ||||||||||||||||||| |
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| T |
34035982 |
tgttcataagttgttttcaacttattttcgcaagttctctaagatagcttatga |
34035929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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