View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_high_52 (Length: 225)

Name: NF3175_high_52
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_high_52
NF3175_high_52
[»] chr3 (4 HSPs)
chr3 (135-210)||(50981722-50981797)
chr3 (135-210)||(51084856-51084931)
chr3 (16-69)||(50981602-50981655)
chr3 (16-69)||(51084736-51084789)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 50981722 - 50981797
Alignment:
Q  135 gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50981722 gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaact 50981797  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 51084856 - 51084931
Alignment:
Q  135 gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51084856 gaaaataagtgaaattaaaggagatgggtgcatacaatttgtgaaaacgcgagatgattttccttataaattaact 51084931  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 50981602 - 50981655
Alignment:
Q  16 taggccaaagccagaaaggaaaagagatgtgccaatatatatcaaggagatggg 69  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50981602 taggccaaagccagaaaggaaaagagatgtgccaatatatataaaggagatggg 50981655  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 51084736 - 51084789
Alignment:
Q  16 taggccaaagccagaaaggaaaagagatgtgccaatatatatcaaggagatggg 69  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51084736 taggccaaagccagaaaggaaaagagatgtgccaatatatataaaggagatggg 51084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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