View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_low_10 (Length: 499)
Name: NF3175_low_10
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22310043 - 22309963
Alignment:
| Q |
1 |
tcaaattttaaaattcaaaatttgcctcccaaacatgtaacctaggtgtgttaaacaagctatcatacctcattaatgttg |
81 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22310043 |
tcaaattttaaaattcaaatttttcctcccagacatgtaacctaggtgtgttaaacaagctatcatacctcattaatgttg |
22309963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 22310108 - 22310029
Alignment:
| Q |
20 |
atttgcctcccaaacatgtaacctaggtgtgttaaacaagctatcatacctcattaatgttgttttcaaattttaaaatt |
99 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22310108 |
atttccctcccaagcatgtaatctaggtgtgctaaacaagctatcatacctcattaatgttgttttcaaattttaaaatt |
22310029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 43732942 - 43732850
Alignment:
| Q |
77 |
tgttgttttcaaattttaaaatttgaatttccctcccaaatgt--atatgtcatcacttaagagccttttgtgttgccaactacttaacttaa |
167 |
Q |
| |
|
||||| |||||| |||| ||||||||||||||||||||| ||| | ||||||||| | ||| | |||||| ||||||||||| ||||||| |
|
|
| T |
43732942 |
tgttgatttcaagttttcaaatttgaatttccctcccaagtgtggacatgtcatcattaaagtttcctttgtgctgccaactactcaacttaa |
43732850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 18140755 - 18140659
Alignment:
| Q |
73 |
ttaatgttgttttcaaattttaaaatttgaatttccctcccaaatgt--atatgtcatcacttaagagccttttgtgttgccaactacttaacttaa |
167 |
Q |
| |
|
||||||||| |||||| |||| ||||||||||||||||||||| ||| | ||||||||| | ||| | |||||||||||||||||| ||||||| |
|
|
| T |
18140755 |
ttaatgttgatttcaagttttcaaatttgaatttccctcccaagtgtggacatgtcatcattaaagtctcctttgtgttgccaactactcaacttaa |
18140659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 5336470 - 5336566
Alignment:
| Q |
73 |
ttaatgttgttttcaaattttaaaatttgaatttccctcccaaatgt--atatgtcatcacttaagagccttttgtgttgccaactacttaacttaa |
167 |
Q |
| |
|
|||||| || |||||| |||| ||||||||||||||||||||| ||| | ||||||||| | ||| | |||||| ||||||||||| ||||||| |
|
|
| T |
5336470 |
ttaatgctgatttcaagttttcaaatttgaatttccctcccaagtgtggacatgtcatcattaaagtctcctttgtgctgccaactactcaacttaa |
5336566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 5336605 - 5336634
Alignment:
| Q |
211 |
tggctctctatatatagaggccacatgcat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5336605 |
tggctctctatatatagaggccacatgcat |
5336634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University