View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_11 (Length: 435)
Name: NF3175_low_11
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 8402721 - 8402995
Alignment:
| Q |
13 |
aaaatacatagagatatatgcgaagcgttcatgaccaacaaataccaaggtccaagggaagagtaatagaatcaattctttccggagcataaagctgcaa |
112 |
Q |
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| T |
8402721 |
aaaatacatagagatatatgcgaagcgttcatgaccaacaaataccaaggtccaagggaagagtaatagaatcaattctttctggagcataaagctgcaa |
8402820 |
T |
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| Q |
113 |
aacttacaatgttatacaaattacattttattctcacccctagccccaactaagaagaaaagcatnnnnnnntgtgaaatagtaccaatgaatcattcat |
212 |
Q |
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| T |
8402821 |
aacttacaatgttatacaaattacattttattctcacccctagccccaactaagaagaaaagcataaaaaaatgtgaaatagtaccaatgaatcattcat |
8402920 |
T |
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| Q |
213 |
actaaaaactcaaaatgtaaattcatgcatgtatatataggtttggaaacatatgttaaatgggaaagcaactag |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8402921 |
actaaaaactcaaaatgtaaattcatgcatgtatatataggtttggaaacatatgttaaatgggaaagcaactag |
8402995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 316 - 418
Target Start/End: Original strand, 8403006 - 8403108
Alignment:
| Q |
316 |
gtaattagagaatgggattaggattgtttaaggcgtttttctgttgtactactaaccgagacattcccattgtctcctcttcggagtcctctcccaggca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403006 |
gtaattagagaatgggattaggattgtttaaggcgtttttctgttgtactacaaaccgagacattcccattgtctcctcttcggagtcctctcccaggca |
8403105 |
T |
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| Q |
416 |
tag |
418 |
Q |
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||| |
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| T |
8403106 |
tag |
8403108 |
T |
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