View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_low_12 (Length: 433)

Name: NF3175_low_12
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_low_12
NF3175_low_12
[»] chr7 (5 HSPs)
chr7 (131-226)||(29856592-29856686)
chr7 (228-308)||(17835106-17835185)
chr7 (227-309)||(25248879-25248960)
chr7 (225-308)||(12599184-12599266)
chr7 (228-308)||(12611862-12611941)
[»] chr5 (2 HSPs)
chr5 (228-386)||(22860583-22860743)
chr5 (287-332)||(28297704-28297749)
[»] chr2 (7 HSPs)
chr2 (228-423)||(45109481-45109675)
chr2 (242-423)||(45107776-45107956)
chr2 (242-339)||(37349758-37349854)
chr2 (164-226)||(21426043-21426105)
chr2 (242-339)||(4108919-4109015)
chr2 (227-342)||(13968919-13969033)
chr2 (228-337)||(19038249-19038361)
[»] chr1 (1 HSPs)
chr1 (226-402)||(7351733-7351910)
[»] chr3 (5 HSPs)
chr3 (228-339)||(17441746-17441856)
chr3 (250-342)||(20127612-20127703)
chr3 (242-339)||(17471991-17472087)
chr3 (242-339)||(14486384-14486480)
chr3 (291-402)||(25407337-25407451)
[»] chr4 (4 HSPs)
chr4 (225-339)||(25243424-25243537)
chr4 (242-339)||(31954759-31954855)
chr4 (227-339)||(24826610-24826721)
chr4 (247-339)||(40137837-40137928)
[»] chr8 (1 HSPs)
chr8 (126-226)||(41311444-41311544)
[»] chr6 (1 HSPs)
chr6 (242-332)||(16990204-16990293)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 29856686 - 29856592
Alignment:
Q  131 gttttcaccaacataattctatgcgagggtgatgcagcaagatgaaaatgtgaagttgaaaaatgaggatgagagatcatagaaagccataactta 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  29856686 gttttcaccaacataattctatgcgagggtgatgcagcaagatgaaaatgtgaagttg-aaaatgaggatgagagatcatagaaatccataactta 29856592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 17835185 - 17835106
Alignment:
Q  228 tgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcact 308  Q
    ||||||||| | | |||| ||||||||||||||| |||||||||||||  ||||| ||||||||||||| |||||||||||    
T  17835185 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacg-tcctaggtggagtctcaagagcact 17835106  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 25248879 - 25248960
Alignment:
Q  227 ttgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactc 309  Q
    |||||||||| | | |||| ||||||||||||||| |||||||||||||  ||||| ||| ||||||||| ||||||||||||    
T  25248879 ttgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacg-tccaaggtggagtctcaagagcactc 25248960  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 12599184 - 12599266
Alignment:
Q  225 tattgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcact 308  Q
    |||||||||||| | | |||| |||||| |||||||| |||||||||||||  ||||| ||||||||||||| |||| ||||||    
T  12599184 tattgttcacgtatctaaacacaagttagttacaacaggtgagctgctcagtaaaacg-tcctaggtggagtctcaatagcact 12599266  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 308
Target Start/End: Original strand, 12611862 - 12611941
Alignment:
Q  228 tgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcact 308  Q
    ||||||||| | | |||| ||||||||||||||| |||||||||||||  ||||| ||||||||| ||| |||| ||||||    
T  12611862 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtaaaacg-tcctaggtgaagtctcaatagcact 12611941  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 228 - 386
Target Start/End: Complemental strand, 22860743 - 22860583
Alignment:
Q  228 tgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaaga 327  Q
    ||||||||| | | |||||||||||||||||||| |||||||||| || ||||||| |||| ||||||| |||| ||||||| || |||||||||||| |    
T  22860743 tgttcacgtatgtaaacataagttaattacaacaggtgagctgcttagtgaaacgt-cctacgtggagtctcaaaagcactcttacgaagtaaatgaaca 22860645  T
Q  328 atacattgttttcaccgttttggatc--tcatatcaaacatctaagtgt-ccccttttatag 386  Q
    ||||||||||||||| |||||| |||  ||  ||||||||||||||||| ||||||||||||    
T  22860644 atacattgttttcactgttttgaatctgtcccatcaaacatctaagtgtcccccttttatag 22860583  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 28297704 - 28297749
Alignment:
Q  287 taggtggagtttcaagagcactcataagaagtaaatgaagaataca 332  Q
    |||||||||| | |||||||||| ||||||||||||||| ||||||    
T  28297704 taggtggagtcttaagagcactcttaagaagtaaatgaataataca 28297749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 228 - 423
Target Start/End: Original strand, 45109481 - 45109675
Alignment:
Q  228 tgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaaga 327  Q
    ||||||||| | | |||| ||| ||||||||||| ||||||||||||| ||||| | |||||||||||| |||||||||||| ||||||||||||||| |    
T  45109481 tgttcacgtatgtaaacacaagataattacaacaggtgagctgctcagtgaaacat-cctaggtggagtctcaagagcactcttaagaagtaaatgaata 45109579  T
Q  328 atacattgttttcaccgttttggatctc--atatcaaacatctaagtgt-ccccttttatagccatcatagtattggtggtctaatgggcctttctctg 423  Q
    |||||||||||||||| ||| | |||||   | ||||||||||||| || ||||||| |||| ||||| ||   || |||| |||||||||||||||||    
T  45109580 atacattgttttcaccatttggaatctcttctctcaaacatctaagagtccccctttaatagtcatcaaag---tgttggtttaatgggcctttctctg 45109675  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 242 - 423
Target Start/End: Original strand, 45107776 - 45107956
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgttttca 341  Q
    |||| ||| ||||||||||| ||||||||||||| ||||| | |||||||||||| |||||||||||  ||||||||||||||| |||||||||||||||    
T  45107776 aacacaagataattacaacaggtgagctgctcagtgaaacat-cctaggtggagtctcaagagcactattaagaagtaaatgaataatacattgttttca 45107874  T
Q  342 ccgttttggatctc--atatcaaacatctaagtgt-ccccttttatagccatcatagtattggtggtctaatgggcctttctctg 423  Q
    || | | | |||||   | |||||||||||||||| ||||||| |||| ||||| ||   || |||| |||||||||||||||||    
T  45107875 ccatctggaatctcttctctcaaacatctaagtgtccccctttaatagtcatcaaag---tgttggtttaatgggcctttctctg 45107956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 37349854 - 37349758
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgtttt 339  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||| |||||| ||||||    
T  37349854 aacacaagttaattacaacaggtgagctgctcagtgaaacgt-cctaggtggagtctcaagagcactcttcagaagtaaatgaataatacaatgtttt 37349758  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 21426105 - 21426043
Alignment:
Q  164 gcagcaagatgaaaatgtgaagttgaaaaatgaggatgagagatcatagaaagccataactta 226  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21426105 gcagcaagttgaaaatgtgaagttgaaaaatgaggatgagagatgatagaaagccataactta 21426043  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 4108919 - 4109015
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgtttt 339  Q
    |||| ||||||||||||||| ||||||||||||| |||||| ||| ||||||||| ||||||||||||   |||||||| |||| |||||| ||||||    
T  4108919 aacacaagttaattacaacaggtgagctgctcagtgaaacg-tccaaggtggagtctcaagagcactctacagaagtaactgaataatacaatgtttt 4109015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 342
Target Start/End: Complemental strand, 13969033 - 13968919
Alignment:
Q  227 ttgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaag 326  Q
    |||||||||| | | |||| ||||||||||||||| ||||||||||||  |||||| || |||| ||||| |||||||||||| |||||| ||| ||||     
T  13969033 ttgttcacgtatgtaaacacaagttaattacaacaagtgagctgctcaatgaaacg-tcttaggaggagtctcaagagcactcttaagaaataactgaat 13968935  T
Q  327 aatacattgttttcac 342  Q
    |||||| | |||||||    
T  13968934 aatacactattttcac 13968919  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 19038249 - 19038361
Alignment:
Q  228 tgttcacgtgtatgaacataagttaatt-acaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactc---ataagaagtaaatg 323  Q
    ||||||||| | | |||| ||||||||| |||||| ||||||||||||  |||| || |||||||||| || |||||||||||   |||||| ||| |||    
T  19038249 tgttcacgtatgtaaacacaagttaatttacaacaggtgagctgctcaatgaaatgt-cctaggtggaattccaagagcactctgaataagacgtatatg 19038347  T
Q  324 aagaatacattgtt 337  Q
    || |||||||||||    
T  19038348 aaaaatacattgtt 19038361  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 402
Target Start/End: Original strand, 7351733 - 7351910
Alignment:
Q  226 attgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaa 325  Q
    ||||||||||| | | |||| ||| ||||||||||| ||||||| ||||| ||||| | | |||||||||| |||||||||||| ||| |||||||||||    
T  7351733 attgttcacgtatgtaaacacaagataattacaacaggtgagctactcagtgaaacat-cttaggtggagtctcaagagcactcttaaaaagtaaatgaa 7351831  T
Q  326 gaatacattgttttcaccgttttggatctc--atatcaaacatctaagtgtccccttttatagccatcatagtattggt 402  Q
     ||||||||||||||||| | | | |||||   | |||||||||||||||||||||||||||| ||||| ||| |||||    
T  7351832 taatacattgttttcaccatctggaatctcctctctcaaacatctaagtgtccccttttatagtcatcaaagtgttggt 7351910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 17441856 - 17441746
Alignment:
Q  228 tgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaaga 327  Q
    ||||||||| | | |||| ||||||||||||||| ||||||||||||| ||||||| |||||||||||| || ||||||||| | ||||||||||||| |    
T  17441856 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaacgt-cctaggtggagtctcgagagcactcttcagaagtaaatgaata 17441758  T
Q  328 atacattgtttt 339  Q
    ||||| ||||||    
T  17441757 atacaatgtttt 17441746  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 20127612 - 20127703
Alignment:
Q  250 ttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgttttcac 342  Q
    ||||||||||||  |||||||||||| ||||| | | |||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||    
T  20127612 ttaattacaacagatgagctgctcagtgaaacat-cataggtggagtctcaagagcactcttaagaaataaatgaataatacattgttttcac 20127703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 17472087 - 17471991
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgtttt 339  Q
    |||| ||||||||||||||| ||||||||||||| ||||| | |||| ||||||| || ||||||||| | ||||||||||||| |||||| ||||||    
T  17472087 aacacaagttaattacaacaggtgagctgctcagtgaaacat-cctacgtggagtctcgagagcactcttcagaagtaaatgaataatacaatgtttt 17471991  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 14486384 - 14486480
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgtttt 339  Q
    ||||||||||||||||||||  ||||||| |||| |||| |||  |||||||||| |||||||||||| | ||||||||||||| |||| | ||||||    
T  14486384 aacataagttaattacaacagatgagctgttcagtgaaatgttt-taggtggagtctcaagagcactcttcagaagtaaatgaataatatactgtttt 14486480  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 25407337 - 25407451
Alignment:
Q  291 tggagtttcaagagcactcataagaagtaaatgaagaatacattgttttcaccgttttgg---atctcatatcaaacatctaagtgtccccttttatagc 387  Q
    |||||||||||||||| |  ||| |||||||| ||||| ||||||||||||  |||||     || ||  |||||| |||||||||||||||||||||||    
T  25407337 tggagtttcaagagcattgttaaaaagtaaataaagaaaacattgttttcattgttttttgatatgtctcatcaaatatctaagtgtccccttttatagc 25407436  T
Q  388 catcatagtattggt 402  Q
    ||||| |||||||||    
T  25407437 catcaaagtattggt 25407451  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 339
Target Start/End: Complemental strand, 25243537 - 25243424
Alignment:
Q  225 tattgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatga 324  Q
    |||||||||||| | | |||| || |||||||||||| ||||||||||||| ||||| | |||||||||||| ||||||||||||  |||||||||||||    
T  25243537 tattgttcacgtatgtaaacacaaattaattacaacaggtgagctgctcagtgaaacat-cctaggtggagtctcaagagcactctcaagaagtaaatga 25243439  T
Q  325 agaatacattgtttt 339  Q
    | |||||| ||||||    
T  25243438 ataatacactgtttt 25243424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 31954855 - 31954759
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgtttt 339  Q
    |||| ||||||||||||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||   || |||||||||| |||||| ||||||    
T  31954855 aacacaagttaattacaacaggtgagctgctcagtgaaacg-tcctaggtggagtctcaagagcactctacaggagtaaatgaataatacaatgtttt 31954759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 339
Target Start/End: Complemental strand, 24826721 - 24826610
Alignment:
Q  227 ttgttcacgtgtatgaacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaag 326  Q
    |||||||||| | | |||| ||||||||||||||| ||||||||||||  ||||| | |||||||||||| |||||| |||||   |||||||||||||     
T  24826721 ttgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcaatgaaacat-cctaggtggagtctcaagatcactctacagaagtaaatgaat 24826623  T
Q  327 aatacattgtttt 339  Q
    |||||| ||||||    
T  24826622 aatacaatgtttt 24826610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 40137928 - 40137837
Alignment:
Q  247 aagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaatacattgtttt 339  Q
    ||||||||||||||| |||||||||| || ||||| | |||||||||||| ||||||| |||| | ||||||||||||| |||||| ||||||    
T  40137928 aagttaattacaacaggtgagctgcttagtgaaacat-cctaggtggagtctcaagagaactcttcagaagtaaatgaataatacaatgtttt 40137837  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 41311444 - 41311544
Alignment:
Q  126 gataagttttcaccaacataattctatgcgagggtgatgcagcaagatgaaaatgtgaagttgaaaaatgaggatgagagatcatagaaagccataactt 225  Q
    |||||||||||||| |||| |||||||| | || |||||||||||| ||||||||||||| ||  ||||  |||| |||||| | ||| |||||| ||||    
T  41311444 gataagttttcaccgacatgattctatgtgtggatgatgcagcaagttgaaaatgtgaagatgccaaatagggatcagagattagagagagccatgactt 41311543  T
Q  226 a 226  Q
    |    
T  41311544 a 41311544  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 16990204 - 16990293
Alignment:
Q  242 aacataagttaattacaacacgtgagctgctcagcgaaacgttcctaggtggagtttcaagagcactcataagaagtaaatgaagaataca 332  Q
    |||| |||| |||||| ||| ||||||||||  | ||||| | | |||||||||| |||||||||||| ||||||||||||||| ||||||    
T  16990204 aacacaagtcaattactacaggtgagctgctatgtgaaacat-cttaggtggagtctcaagagcactcttaagaagtaaatgaataataca 16990293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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