View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_13 (Length: 419)
Name: NF3175_low_13
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 36271834 - 36272157
Alignment:
| Q |
15 |
aaacggtggcacttcttatatgtgataatataaatggta---cattcgaagaatatcaataaaatatattttaatttaagtgaaaaaagttcatcctaat |
111 |
Q |
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| T |
36271834 |
aaacggtggcacttcttatatgtgataatataaatggtagtacattctaagaatatcaataaaatatattttaatttaagtgaaaaaagttcatcctaat |
36271933 |
T |
|
| Q |
112 |
aaagactagacatggagtaagataaattgcatatttttcttatacatactttatgggacgcaacacttgcattcatatctctaattgttatggacattcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36271934 |
aaagactagacatggagtaagataaattgcatatttttcttatacatactttatgggacgcaacacttgcattcatatctctatttgttatggacattcc |
36272033 |
T |
|
| Q |
212 |
cagggcccttgattttcaaagccttcttgttctcctcctctcatatgaggcatttgatattctcctccgccacatcctcctccataaccactatattctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36272034 |
cagggcccttgattttcaaagccttcttgttctcctcctctcatatgaggcatttgatattctcctccgccacatcctcctccataaccactatattctc |
36272133 |
T |
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| Q |
312 |
ctcttcccatagctacttcatttt |
335 |
Q |
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|||||||||||||||||||||||| |
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| T |
36272134 |
ctcttcccatagctacttcatttt |
36272157 |
T |
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