View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_19 (Length: 344)
Name: NF3175_low_19
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_19 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 328
Target Start/End: Original strand, 33393172 - 33393302
Alignment:
| Q |
195 |
gttattgaataaataggtaaaatggtaggtgtatgaagtaatggtgcaaaatggactagaatcttcttccgaaggatcaaaacttgttgaccaatccatg |
294 |
Q |
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| T |
33393172 |
gttattgaataaataggtcagatgaaaggtgtatgaagtaatggtgcaaaatggactagaatcttc---cataggatcagaacttgttgacctagccatg |
33393268 |
T |
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| Q |
295 |
acttagggtattcaaatggaactcatgaccaatt |
328 |
Q |
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| T |
33393269 |
acttagggcattcaaatggaactcaagaccaatt |
33393302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 33392988 - 33393084
Alignment:
| Q |
11 |
atcatcacactttattagtctccagcaatctctctttgtctctagtgtctctgaatctccctagagcatctcctttgtcactctcttataacattat |
107 |
Q |
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| T |
33392988 |
atcatcacactctattagtctccagcaatctctctcagtctctagtgtctctcaatctccctaaagcatctcctttgtcactctctgataacattat |
33393084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 21452751 - 21452807
Alignment:
| Q |
195 |
gttattgaataaataggtaaaatggtaggtgtatgaagtaatggtgcaaaatggact |
251 |
Q |
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| T |
21452751 |
gttattgaataaataggtatagtggaaggtgtatgaagaaatggtgcaagatggact |
21452807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 1416 - 1472
Alignment:
| Q |
195 |
gttattgaataaataggtaaaatggtaggtgtatgaagtaatggtgcaaaatggact |
251 |
Q |
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| T |
1416 |
gttattgaataaataggtatagtggaaggtgtatgaagaaatggtgcaagatggact |
1472 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 42935941 - 42935885
Alignment:
| Q |
196 |
ttattgaataaataggtaaaatggtaggtgtatgaagtaatggtgcaaaatggacta |
252 |
Q |
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| T |
42935941 |
ttattgaataaataggtaaaatgatatgtgtattaagcaatggtgcaagatggacta |
42935885 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 44967117 - 44967065
Alignment:
| Q |
195 |
gttattgaataaataggtaaaatggtaggtgtatgaagtaatggtgcaaaatg |
247 |
Q |
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| T |
44967117 |
gttattgaataaataggcaaaataggaggtgtatgaagtaatgatgtaaaatg |
44967065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 259
Target Start/End: Complemental strand, 14737896 - 14737833
Alignment:
| Q |
196 |
ttattgaataaa-taggtaaaatggtaggtgtatgaagtaatggtgcaaaatggactagaatctt |
259 |
Q |
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| T |
14737896 |
ttattgaataaaatagg-aaaatgagaggtgtatgaagtattagtgcaaaatgggctagaatctt |
14737833 |
T |
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