View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_20 (Length: 333)
Name: NF3175_low_20
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_20 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 38727648 - 38727975
Alignment:
| Q |
2 |
ccacacataaatgtgacaagtgtccatgtgatcctttaatctctaacctcttccttagtactcttgtgatgttacaacaaaaaccaatgtgattttggta |
101 |
Q |
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| T |
38727648 |
ccacacacaaatgtgacaagtgtccatgtgaccctttaatctctaacctcttacttagtactcttgtgatgttacaacaaaaaccaatgtgattttggta |
38727747 |
T |
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| Q |
102 |
caagtcaggaaaatggttatgtagttttgtaaacacaaagtcagagacagggctcatcaagatgaatagaagcccaatataatgaatccattctgttaac |
201 |
Q |
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| T |
38727748 |
caagtcaggaaaatggttatgtagttttgtacacacaaagtcagagacagggctcatcaagatgaatagaagccca----aatgaatccattctgttaac |
38727843 |
T |
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| Q |
202 |
atcagaatggtctccaactaattgaaaggtgtagtagaagtcatagtcacgtagccaaatcaaccacgagaaaacaactacatattacatcaagaaggtg |
301 |
Q |
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| T |
38727844 |
atcagaatggtctccaactaattgaaaagtgtagtagaagtcatagtcacgtagccaaatcaaccacgagaaaacaactacatattacatcaagaaggtg |
38727943 |
T |
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| Q |
302 |
aggcaaaatgcatttgttaaactattaattaa |
333 |
Q |
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| T |
38727944 |
aggcaaaatgcatttgttagactattaattaa |
38727975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 49 - 333
Target Start/End: Original strand, 4826107 - 4826387
Alignment:
| Q |
49 |
ctcttccttagtactcttgtgatgttacaacaaaaaccaatgtgattttggtacaagtcaggaaaatggttatgtagttttgtaaacacaaagtcagaga |
148 |
Q |
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| T |
4826107 |
ctcttacttagtactcttgtcatgttacaacacaaaccaatgtgattttggtacaagtcaggaaaatggttatgtagttttgtaaacacaaagtcagaga |
4826206 |
T |
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| Q |
149 |
cagggctcatcaagatgaatagaagcccaatataatgaatccattctgttaacatcagaatggtctccaactaattgaaaggtgtagtagaagtcatagt |
248 |
Q |
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| T |
4826207 |
cagggctcatcaagatgaatagaagcccaa----atgaatccattctgttaacatcagaatggtctccaactaattgaaaggtgtagtagaagtcatagt |
4826302 |
T |
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| Q |
249 |
cacgtagccaaatcaaccacgagaaaacaactacatattacatcaagaaggtgaggcaaaatgcatttgttaaactattaattaa |
333 |
Q |
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| T |
4826303 |
cacgtagccaaattaaccacgagaaaacaactacatattacatcaagaaggtgaggcaaaatgcatttgttaaactattaattaa |
4826387 |
T |
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