View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_low_22 (Length: 321)
Name: NF3175_low_22
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6149150 - 6148916
Alignment:
| Q |
1 |
cccgcattttaagagtaaagaaagaagagacgggtaattaatactttaacaaaatttattttaattaagggtttgcctaacttaactcgtacctttgttc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6149150 |
cccgcattttaagagtaaagaaaaaagagacgggtaattaatactttaacaaaatttattttaattaagggtttgtctaacttaactcgtacctttgttc |
6149051 |
T |
|
| Q |
101 |
ttatctcgttctacttggaaagaaaatatgtaaaaaggaaatttaaatagacaaaatatttttagggctttaacttcgcaccccacatacacccttctgt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6149050 |
ttatctcgttctacttagaaagaaaaaatgtaaaaaggaaatttaaatagacaaaatatttttagggctttaacttcacaccccacatacacccttctgt |
6148951 |
T |
|
| Q |
201 |
tttcctctaagtatattatgttcaaggtttgtttg |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6148950 |
tttcctctaagtatattatgttcaaggtttgtttg |
6148916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University