View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_23 (Length: 317)
Name: NF3175_low_23
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_23 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 10032663 - 10032972
Alignment:
| Q |
10 |
aataatatatgaacgagtagcacattattaacttcaatttccgatcattatagcataaagggggccaatgatatgagttttattggccactaaaacacaa |
109 |
Q |
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| T |
10032663 |
aataatatatgaacgagtagcacattattaacttcaatttccgatcattatagcataaagggggccaatgatatgagttttattggccactaaaacacaa |
10032762 |
T |
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| Q |
110 |
tgataagtctcatcaaccatatcttgcggtatttgtttattccaagtgctgttcatcttttattatagctttatagccactcacaaaagttaattaattc |
209 |
Q |
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| T |
10032763 |
tgataagtctcatcaaccatatcttgcggtatttgtttattccaagtgctgttcatcttttattatagctttatagccactcacaaaagttaattaattc |
10032862 |
T |
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| Q |
210 |
gttgga--ttgactacaaaagaaaacgatgcctttcttatctagaaaaatccacatataggccccggatataaaggagaacatatgttaaagtaaattat |
307 |
Q |
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| T |
10032863 |
gttggattttgactacaaaagaaaacgatgcctttcttatctagaaaaatccacatataggccccggatataaaggagaacatatgttaaagtaaattat |
10032962 |
T |
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| Q |
308 |
tgatgacttt |
317 |
Q |
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| T |
10032963 |
tgatgacttt |
10032972 |
T |
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