View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_low_26 (Length: 306)
Name: NF3175_low_26
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 292
Target Start/End: Original strand, 11618184 - 11618465
Alignment:
| Q |
11 |
atgaaaattgatggttttgagaaatacacaaaaattgcttgtgaatacaaacaaatgtatgataccaagttgatgaatttaatggattactatggtatag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11618184 |
atgaaaattgatggttttgagaaatacacaaaaattgcttgtgaatacaaacaaatgtatgataccaagttgatgaatttaatggattactatggtatag |
11618283 |
T |
|
| Q |
111 |
aaacagaagcagaaataattagtggcaatattttgaagatgtcaaaatctttcaatgatagaaaggataaagaaggaataaatcatgcagtgatgtcact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11618284 |
aaacagaagcagaaataattagtggcaatattttgaagatgtcaaaatctttcaatgatagaaaggataaagaaggaataaatcatgcagtgatgtcact |
11618383 |
T |
|
| Q |
211 |
aaggaatgaagctagaagttggtttagtgagatgataagaaaatcaaattctcaaggtggtggtggtgatgatgattcttat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11618384 |
aaggaatgaagctagaagttggtttagtgagatgataagaaaatcaaattctcaaggtggtggtggtgatgatgattcttat |
11618465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 11631308 - 11631380
Alignment:
| Q |
92 |
atggattactatggtatagaaacagaagcagaaataattagtggcaatattttgaagatgtcaaaatctttca |
164 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||| | ||||| |||||| |||| |||||||||||||||| |
|
|
| T |
11631308 |
atggactactatggtatcaaaactgaagcagaaatcctaagtggaaatattatgaaaatgtcaaaatctttca |
11631380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 11682820 - 11682748
Alignment:
| Q |
92 |
atggattactatggtatagaaacagaagcagaaataattagtggcaatattttgaagatgtcaaaatctttca |
164 |
Q |
| |
|
||||| ||||||||||| |||| ||| ||||||| |||||||| |||||| |||| ||||| |||||||||| |
|
|
| T |
11682820 |
atggactactatggtatcaaaactgaatcagaaatcattagtgggaatattatgaaaatgtcgaaatctttca |
11682748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University