View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_28 (Length: 296)
Name: NF3175_low_28
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 36027449 - 36027214
Alignment:
| Q |
42 |
gactgttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgagtagggtaagattgg |
141 |
Q |
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| T |
36027449 |
gactgttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgggtagggtaagattgg |
36027350 |
T |
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| Q |
142 |
acgcactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaatataacg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36027349 |
acgcactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaatataacg |
36027250 |
T |
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| Q |
242 |
tacacaatcacttaaatatcaactaatattaaagat |
277 |
Q |
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| T |
36027249 |
tacacaatcacttaaatatcaactaatattaaagat |
36027214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 46 - 234
Target Start/End: Original strand, 16931801 - 16931987
Alignment:
| Q |
46 |
gttttcaaacaataatatatttatcaaactcattgctgaaattagacagggatgatatgataaataagagatatcatctgagtaggg-taagattggacg |
144 |
Q |
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|||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||| || |||| |||||| | |||||| |||||||||||| |
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| T |
16931801 |
gttttcaaacaatattatatttatcaaactcatcgttgaa-ttagacagggatgatatgataattatgagaaatcatcggggtaggggtaagattggacg |
16931899 |
T |
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| Q |
145 |
cactaatatcgctggtcatgagaggtgcagagatatatcttttaccaactaaaatcaccacaccacattaccagcaatcattgtgaaaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16931900 |
cactaatatcgctggtcatgagaggtgcagag--atatctttaaacaactaaaatcatcacaccacattaccagcaatcattgtgaaaaa |
16931987 |
T |
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