View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_3 (Length: 632)
Name: NF3175_low_3
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_3 |
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| [»] scaffold0597 (2 HSPs) |
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| [»] scaffold0941 (1 HSPs) |
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Alignment Details
Target: scaffold0597 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: scaffold0597
Description:
Target: scaffold0597; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 160 - 622
Target Start/End: Original strand, 3521 - 3983
Alignment:
| Q |
160 |
agatattataactattaatattgtccctgaagttgctggtacaagtagattgacaggcaagctacctatttccattgtggtgtccaaacaagcagatgtt |
259 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3521 |
agatattatacctattaatgttgtccctgaagttgctggtacaagtagattgacaggcaagctacctatttccactgtggtgtccaaacaagcagatgtt |
3620 |
T |
|
| Q |
260 |
tttaatctagtggttgatgatcaaggctttcaaacagctaccagtaaatcaacaaagaagattagaaaaagatttccaatcagaagagctcaaagcaaaa |
359 |
Q |
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| T |
3621 |
gctaatccagtggttgatgatcaaggctttcaaacagttactagtaaatcaacaaagaagattagaaaaagattgccaatcagaagagctcaaagcagaa |
3720 |
T |
|
| Q |
360 |
accctacattacctgatcaaaaggttggtgcatccagacctttcaaatgaagtgcttatattggaatcttagaggtttggctaattctcccacaaaatta |
459 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3721 |
accctacattaccatatc-aaaggttggtgcatccagacctttcaaatgaagtgcctatattggaatcttagagggttggctaattctcccacaaaatta |
3819 |
T |
|
| Q |
460 |
gcattaaaaaagttacttattaaatttaaacctgaactatgttttatagttgaaccctggatgtctatatccaaccttt-cctcagatggttgcataatc |
558 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || | ||||||||||||||| |
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| T |
3820 |
gcattaaaaaagttacttattaaatttaaacctgaactatgttttatagctgaaccttggatgtctatatccaacctttccccctgatggttgcataatc |
3919 |
T |
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| Q |
559 |
ttggccttaaagtttgtgtagtgaataatagaggtcctcttcttccaaacctgtggtgtctgtg |
622 |
Q |
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| T |
3920 |
ctagccttaaagtttgtgtagttaataatagaggtcctcttcttccaaacatgtggtgtctgtg |
3983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0597; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 3 - 171
Target Start/End: Original strand, 159 - 326
Alignment:
| Q |
3 |
tggttcaaatcacaatgaggtgcgggatgaggaagcagaaagtagtaataaggaatatgatattgtgcagaaggatataaattttttaaaagactctttg |
102 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
159 |
tggttcaaatcacaatgatgtgaaggatgaggaagcagaaagcagtgataaggaatatgatattgtgtagaaggatataaattttttaaaagactc-ttg |
257 |
T |
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| Q |
103 |
ggccaatttagaagagttggacgctaatgacggagatataggggcaaatgttcagctagatattataac |
171 |
Q |
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| T |
258 |
ggccaatttagaagagttggaggctaatgatggtgatataggggcaaatgttcagctcgatattgtaac |
326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 379 - 592
Target Start/End: Complemental strand, 20970090 - 20969876
Alignment:
| Q |
379 |
aaaggttggtgcatccagacctttcaaatgaagtgcttatattggaatcttagaggtttggctaattctcccacaaaattagcattaaaaaagttactta |
478 |
Q |
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|||||||||| | ||| |||| ||| |||||||| || |||||||| || |||||||| ||||||||||| | ||||||||| || |||||||||||| |
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| T |
20970090 |
aaaggttggtaaacccaaacctgtcagatgaagtgtttttattggaacctaagaggtttagctaattctcctaaaaaattagctgtacaaaagttactta |
20969991 |
T |
|
| Q |
479 |
ttaaatttaaacctgaactatgttttatagttgaaccctggatgtctatatccaacctttcctc-agatggttgcataatcttggccttaaagtttgtgt |
577 |
Q |
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||||||| || ||||| |||||||||||| ||| | |||||| |||| || ||||||||| | || ||||| || ||||||| |||||||||||| |
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| T |
20969990 |
ttaaattcaagcctgatttatgttttatagctgagtcttggatgcctatttcaaacctttcccctaggtggtttcaaaatcttgatcttaaagtttgtac |
20969891 |
T |
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| Q |
578 |
agtgaataatagagg |
592 |
Q |
| |
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|| ||||||||||| |
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| T |
20969890 |
tgtcaataatagagg |
20969876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 461
Target Start/End: Complemental strand, 22166163 - 22166103
Alignment:
| Q |
401 |
ttcaaatgaagtgcttatattggaatcttagaggtttggctaattctcccacaaaattagc |
461 |
Q |
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| T |
22166163 |
ttcaaatgaagtgcttttactggaaccttaggggtttagctaattctcccataaaattagc |
22166103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 15090951 - 15090869
Alignment:
| Q |
379 |
aaaggttggtgcatccagacctttcaaatgaagtgcttatattggaatcttagaggtttggctaattctcccacaaaattagc |
461 |
Q |
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| T |
15090951 |
aaaggttggtgcccccaaacctttcagatgaagtgcttttactggaatttaagaggtttagctaattcacctacgaaattagc |
15090869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0941 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 1523 - 1605
Alignment:
| Q |
379 |
aaaggttggtgcatccagacctttcaaatgaagtgcttatattggaatcttagaggtttggctaattctcccacaaaattagc |
461 |
Q |
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|||||||||||| ||| ||||| | ||||||||| | |||||||| | |||||||| ||||||||||| ||||||||||| |
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| T |
1523 |
aaaggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagc |
1605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 30411395 - 30411492
Alignment:
| Q |
430 |
agaggtttggctaattctcccacaaaattagcattaaaaaagttacttattaaatttaaacctgaactatgttttatagttgaaccctggatgtctat |
527 |
Q |
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|||||||| |||||| |||||||||||||||| ||||| || | |||||||||| ||| | ||| ||||||||| |||||||| ||||||||| |
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| T |
30411395 |
agaggtttagctaatactcccacaaaattagctttaaagaaacttcttattaaatataagcatgatatatgttttacctatgaaccctagatgtctat |
30411492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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