View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_31 (Length: 275)
Name: NF3175_low_31
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 33273710 - 33273468
Alignment:
| Q |
13 |
aaaatcgatatcacatatttaacatacgacgtgttcaacaataaataatatacaaacatacctaacctaatttccctaaccttatagcgtggaacataat |
112 |
Q |
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| T |
33273710 |
aaaatcgatatcacatatttaacatacgacgtgttcaacaataaataatatacaaacatacctaacctaatttccctaaccttatagcgtggaacataat |
33273611 |
T |
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| Q |
113 |
tttcccacacattcatttcatggcttccaagctctcatttctaaactctctcactcaaagaaagaaacaaaataatgctattaaagatgatcacatcaat |
212 |
Q |
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| T |
33273610 |
tttcccacacattcatttcatggcttccaagctctcatttctaaactctctcactcaaagaaagaaacaaaataatgctattaaagatgatcacatcaat |
33273511 |
T |
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| Q |
213 |
gaagacatagccatagtgaaagcagctgcatgggcatggcatc |
255 |
Q |
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| T |
33273510 |
gaagacatagccatagtgaaagcagctgcatgggcatggcatc |
33273468 |
T |
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