View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_33 (Length: 269)
Name: NF3175_low_33
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_33 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 70 - 269
Target Start/End: Original strand, 38727450 - 38727649
Alignment:
| Q |
70 |
ttgattgccactcccgttacctcctcctgatttgattgaattgaatttattattattatcatctttatcttaatcctcaattaacaaagaaaggtaagtt |
169 |
Q |
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| T |
38727450 |
ttgattgccactcccgtttcctcctcctgatttgattgaattgaatttattattattatcatctttatcttaatcctcaattaacaaagaaaggtaagtt |
38727549 |
T |
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| Q |
170 |
gacacaaaggggcaaatcaatatttgaatctttttagaagaggtatctatattcagtgatacatataccaccattcatggtatacaccactttaacctcc |
269 |
Q |
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| T |
38727550 |
gacacaaaggggcaaatcaatatttgaatctttttagaagaggtatctatattcattgatatatataacaccattcgtggtatacaccgttttaacctcc |
38727649 |
T |
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