View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_37 (Length: 251)
Name: NF3175_low_37
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_37 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 26846823 - 26847056
Alignment:
| Q |
18 |
tcaaccagtagcatttccgaatacttaattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaataacgttttctgta |
117 |
Q |
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| T |
26846823 |
tcaaccagtagcatttccgaatacttgattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaataacgttttctgta |
26846922 |
T |
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| Q |
118 |
ataaggtaattggtgcacttttttgttctctttctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagttg |
217 |
Q |
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| T |
26846923 |
ataaggtaattggtgcacttttttgttccctttctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagttg |
26847022 |
T |
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| Q |
218 |
gatatgttttttggtattgtttcaggattattat |
251 |
Q |
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| T |
26847023 |
gatatgttttttggtattgtttcaggattattat |
26847056 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 54881427 - 54881513
Alignment:
| Q |
18 |
tcaaccagtagcatttccgaatacttaattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaat |
104 |
Q |
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| T |
54881427 |
tcaacaagcagcatttctgaatacttgattgaaacaatacctggttactgttttgaagaccttcttgatgcttctttcccacctaat |
54881513 |
T |
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