View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_low_4 (Length: 619)
Name: NF3175_low_4
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_4 |
 | |
|
| [»] scaffold0536 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 609
Target Start/End: Complemental strand, 48966748 - 48966126
Alignment:
| Q |
16 |
agttcaatcattgaaattaaacacttggccaatattgtcaaaattttaaagagaaaaagaaaaatacgtggtggcttgtcgaatgttggatgaatcatga |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48966748 |
agttcaatcattgaaattaaatacttggccaatattgtcaaaattttaaagagaaaaagaaaaatacgtggtggcttgtcgaatgttggatgaatcatga |
48966649 |
T |
|
| Q |
116 |
atccaataattgtaaacgtgacttcaccaaccata------cctaacagagtataattgttttgcc---------------tgaaatcaaagaaaacaaa |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
48966648 |
atccaataattgtaaacgtgacttcaccaaccataaccatacccaacagagtataaattttttgccctcacttttcttttctgaaatcaaagaaaacaaa |
48966549 |
T |
|
| Q |
195 |
tcttactcttcttctatctatcta--------gcagtgatcaatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcac |
286 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966548 |
tcttactcttcttctatctatctatctatctagcagtgatcaatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcac |
48966449 |
T |
|
| Q |
287 |
caggccatatgatccctatgtgtgacatagcaactctctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttc |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966448 |
caggccatatgatccctatgtgtgacatagcaactatctttgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttc |
48966349 |
T |
|
| Q |
387 |
caaatctcttccctccatagatcctttcttcctccgcattcacaccgttgatttgccctaccaacaagttggtctcccctccggtgtcgaatccatgtcc |
486 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48966348 |
caaatctcttccctccatagatcctctcttcctccgcattcacaccgttgatttcccctaccaacaagttggtctcccctccggtgtcgaatccatgtcc |
48966249 |
T |
|
| Q |
487 |
aacacccctgatcttgcctcctccggcaaactatacgctggagcaatgctcctccaagacccaattcagtatttcatggagaaagttccacctgactgta |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
48966248 |
aacacccctgatcttgcctcctccggcaaactatacgcaggagcaatgctcctccaagaaccaattcagaatttcatggagaaagatccacctgactgta |
48966149 |
T |
|
| Q |
587 |
tcattggtgacttcttgtaccct |
609 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
48966148 |
tcattggtgacttcttgtaccct |
48966126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 227 - 395
Target Start/End: Complemental strand, 48959320 - 48959152
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
||||||||||||||||| || | |||| |||||||||||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||| || |
|
|
| T |
48959320 |
caatggaaggtgttgaagttgatagacctatgaaacttcacttcattccatatccagcacctgggcatatgatccccatgtgtgacatagcaactctgtt |
48959221 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
395 |
Q |
| |
|
|||||| |||||||||||||| || |||||||| |||||||| ||| || ||||| || |||||||||| |
|
|
| T |
48959220 |
tgcatcccatggccaacaagtgacaatcatcaccactccctccaactcccacttctttaccaaatctct |
48959152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 228 - 381
Target Start/End: Complemental strand, 48963461 - 48963308
Alignment:
| Q |
228 |
aatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctcttt |
327 |
Q |
| |
|
|||||| || |||||| || |||||||| ||||||||||||||||||||||||| ||||| || |||||||| ||| || ||||||||||| |||| ||| |
|
|
| T |
48963461 |
aatggagggcgttgaagttgaacgaccattgaaacttcacttcattccatatcttgcacctggtcatatgattcctttgggtgacatagcagctctgttt |
48963362 |
T |
|
| Q |
328 |
gcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttc |
381 |
Q |
| |
|
|| || | ||||||||||||||| |||||||| |||||||| |||||| ||||| |
|
|
| T |
48963361 |
gcgtcccgtggccaacaagtcacaatcatcaccactccctccaacgcccacttc |
48963308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 48952355 - 48952278
Alignment:
| Q |
252 |
accactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgc |
329 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||| |||| || ||||||||| | ||||||||||| |||||||||| |
|
|
| T |
48952355 |
accactcaaactttacttcattccatacttagcagcagggcacatgatccctttatgtgacatagcttctctctttgc |
48952278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 590
Target Start/End: Complemental strand, 48963159 - 48963098
Alignment:
| Q |
529 |
gcaatgctcctccaagacccaattcagtatttcatggagaaagttccacctgactgtatcat |
590 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||||| | |||||||||||| ||||| |
|
|
| T |
48963159 |
gcaatgctcctccacggaccaattcaggatttcatggagaaggatccacctgactgcatcat |
48963098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 48911426 - 48911474
Alignment:
| Q |
281 |
tagcaccaggccatatgatccctatgtgtgacatagcaactctctttgc |
329 |
Q |
| |
|
||||||| ||||| ||||||||| | || |||||||||||||||||||| |
|
|
| T |
48911426 |
tagcacctggccacatgatccctctatgcgacatagcaactctctttgc |
48911474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 13441379 - 13441232
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| | || |||||||||||| | ||||||||||||||| | || |
|
|
| T |
13441379 |
caatggaaggtgttgaagtggaacgaccactgaaaattcacttcattccatatctagcatctggacatatgatccctctttgtgacatagcaactatgtt |
13441280 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgc |
374 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
13441279 |
tgcatcccgtggccaacaagtcacaatcatcaccactccctccaacgc |
13441232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 227 - 395
Target Start/End: Complemental strand, 13462563 - 13462395
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
||||||||||||| ||| || ||| |||||||||||| ||||||||||||||||||||| | || |||||||||||| | | ||||||||||| | | || |
|
|
| T |
13462563 |
caatggaaggtgtagaagttgaacaaccactgaaactgcacttcattccatatctagcatctggacatatgatccctctttttgacatagcaattatgtt |
13462464 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctct |
395 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||||| |||||||| |||| | | | |||| |||||||||| |
|
|
| T |
13462463 |
tgcatcccgtggccaacacgtcacagtcatcaccactccctccaacgtccaatcccttaccaaatctct |
13462395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 227 - 464
Target Start/End: Complemental strand, 13449542 - 13449305
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
||||||||||||||||| || ||| |||| ||||| || |||||||||||| ||| ||| | || |||||||||||| | | ||||||||||||| | || |
|
|
| T |
13449542 |
caatggaaggtgttgaagttgaacaaccattgaaagtttacttcattccatttcttgcatctggacatatgatccctctttttgacatagcaactatgtt |
13449443 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctcttccctccatagatcctttcttcctccgcatt |
426 |
Q |
| |
|
|||||| | |||||| ||||| || ||||||| |||||| | ||||| || | |||| |||||||||| | ||| | ||||| ||||| || || |
|
|
| T |
13449442 |
tgcatcccgtggccagcaagtaacagtcatcaccactcccgccaacgcaaaatcccttaccaaatctctctcatccgacgctccttcattccttcgtctt |
13449343 |
T |
|
| Q |
427 |
cacaccgttgatttgccctaccaacaagttggtctccc |
464 |
Q |
| |
|
||||||||||| || |||| ||||||||| || ||||| |
|
|
| T |
13449342 |
cacaccgttgacttcccctcccaacaagtcggcctccc |
13449305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 235 - 455
Target Start/End: Original strand, 12640495 - 12640715
Alignment:
| Q |
235 |
ggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgcatctc |
334 |
Q |
| |
|
||||||| | || |||| ||| ||||||||| | | |||||| ||||||||| || |||||||| ||| || ||||||||||| || | |||||||| | |
|
|
| T |
12640495 |
ggtgttggagttgaacggccattgaaacttctcatacttccatttctagcacctggtcatatgattcctttgggtgacatagcagctttgtttgcatccc |
12640594 |
T |
|
| Q |
335 |
atggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctcttccctccatagatcctttcttcctccgcattcacaccgt |
434 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| |||||| | ||| || |||||||||| ||| | | ||||| || ||||||||| |||||||||| |
|
|
| T |
12640595 |
atggccaacaagtcacgatcatcaccactccctccaacgcccatttctttaccaaatctctctccttcgtcgatccgtttttcctccgccttcacaccgt |
12640694 |
T |
|
| Q |
435 |
tgatttgccctaccaacaagt |
455 |
Q |
| |
|
|| || |||| ||||||||| |
|
|
| T |
12640695 |
cgacttcccctcccaacaagt |
12640715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 228 - 368
Target Start/End: Complemental strand, 12541851 - 12541711
Alignment:
| Q |
228 |
aatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctcttt |
327 |
Q |
| |
|
|||||||||||||||| || | |||||| | ||| ||||||||||||||||| ||||| | || |||||||||||| | ||||| ||||||||| | ||| |
|
|
| T |
12541851 |
aatggaaggtgttgaagttgatcgaccattaaaaattcacttcattccatatttagcatctggacatatgatccctctttgtgatatagcaactttgttt |
12541752 |
T |
|
| Q |
328 |
gcatctcatggccaacaagtcaccatcatcacaactccctc |
368 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12541751 |
gcatcacatggccaacaagtcacaatcatcaccactccctc |
12541711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 235 - 368
Target Start/End: Complemental strand, 28386499 - 28386366
Alignment:
| Q |
235 |
ggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgcatctc |
334 |
Q |
| |
|
||||||||| || || ||||| ||||||||||||||||||| |||| |||| | || |||||||| || | ||||| ||||||||| | |||||||| | |
|
|
| T |
28386499 |
ggtgttgaagttgaaagaccattgaaacttcacttcattccgtatccagcatctggacatatgatgccactttgtgatatagcaactttgtttgcatcac |
28386400 |
T |
|
| Q |
335 |
atggccaacaagtcaccatcatcacaactccctc |
368 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| |
|
|
| T |
28386399 |
gtggccaacatgtcacaatcatcaccactccctc |
28386366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 227 - 365
Target Start/End: Original strand, 12482461 - 12482599
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||||||| || |||||| || ||||||||||||||||| | || |||||||| || |
|
|
| T |
12482461 |
caatggaaggtgttgaagttgaacgaccattgaaacttcacttcattccatttccagcacctgggcatatgatccctatgtgcaagattgcaactctgtt |
12482560 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactcc |
365 |
Q |
| |
|
|||||| | |||||| || ||||| |||||||| ||||| |
|
|
| T |
12482561 |
tgcatcacgtggccatcatgtcacaatcatcaccactcc |
12482599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 227 - 367
Target Start/End: Original strand, 12589193 - 12589333
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
||||| |||| ||||||||| ||| |||| | |||||||||||||||||||||||| |||| || |||||||||||| | |||||||| ||||| || || |
|
|
| T |
12589193 |
caatgaaaggcgttgaaattgaacaaccattaaaacttcacttcattccatatctatcacctgggcatatgatccctctatgtgacattgcaaccctgtt |
12589292 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactccct |
367 |
Q |
| |
|
|||||| | ||||||||||||||| |||| ||| ||||||| |
|
|
| T |
12589293 |
tgcatcccgtggccaacaagtcacaatcaccaccactccct |
12589333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 227 - 396
Target Start/End: Original strand, 3416536 - 3416705
Alignment:
| Q |
227 |
caatggaaggtgttgaaattaaacgaccactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctt |
326 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||| ||||||||||||| ||||| ||| | |||||||||||||| | | ||| |||||| || | || |
|
|
| T |
3416536 |
caatggtaggtgttgaagtagaacgaccactgaaaattcacttcattccttatcttgcatctagccatatgatccctctttctgatatagcagctatgtt |
3416635 |
T |
|
| Q |
327 |
tgcatctcatggccaacaagtcaccatcatcacaactccctctaacgccaacttcctttccaaatctctt |
396 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || ||| | ||||||||| |
|
|
| T |
3416636 |
tgcatcccatggccaacatgtcacaatcatcaccactccctccaatgccaaatttcttacaaaatctctt |
3416705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 523 - 600
Alignment:
| Q |
252 |
accactgaaacttcacttcattccatatctagcaccaggccatatgatccctatgtgtgacatagcaactctctttgc |
329 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||| || ||||||||| | |||||||| || |||||||||| |
|
|
| T |
523 |
accactcaaactttacttcattccatatctagcagcaggtcacatgatccctctttgtgacattgcctctctctttgc |
600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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