View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_44 (Length: 244)
Name: NF3175_low_44
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 27725142 - 27724971
Alignment:
| Q |
33 |
aataaatactaactgatttcagttatagaaagagcgttggttagttaagttagttaattaacgttttctgtcacatgaattgctcttgcaggcagtggtg |
132 |
Q |
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| T |
27725142 |
aataaatactaactgatttcagttatagaaagagcgttggttagttaagttagttaattaacgttttctgtcacatgaattgctcttgcaggcagtggtg |
27725043 |
T |
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| Q |
133 |
ctgtttgctatgggtggttatggtacctatctgggttttcgcattcgttattccgatgacgtagtaagctat |
204 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| || ||| ||||| |
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| T |
27725042 |
ctgtttgctatgggtggttacggtacctatctgggttttcgcattcgattttccgatgatgtggtacgctat |
27724971 |
T |
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