View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_low_5 (Length: 585)
Name: NF3175_low_5
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 444 - 560
Target Start/End: Original strand, 2377301 - 2377419
Alignment:
| Q |
444 |
atcctacagtttggcactcattcgtgtgcaggata-tacaactttacctcttgcttagtgccgaaattacacaaacgcct-ccatgcacttcaccatatt |
541 |
Q |
| |
|
||||||||||||||||||||||||||||| || | | ||||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
2377301 |
atcctacagtttggcactcattcgtgtgctggctggtgcaactttacctctagctcagtgccgaaattacacaaacgccttccatgcatttcaccatatt |
2377400 |
T |
|
| Q |
542 |
attgcagatgaagaggttc |
560 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2377401 |
attgcagatgaagaggttc |
2377419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 2377195 - 2377280
Alignment:
| Q |
358 |
caaagggatttacattagctttgacaatgttggggggaaacatgcataaggaaacccttcttaacacgagaaaacgatgttgaagtatc |
446 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
2377195 |
caaaggcattgacattaactttgacaatgttggggg--aacatgcataaggaaacccttcttaacaagagaaaacg-tgttgaagtatc |
2377280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 2376357 - 2376397
Alignment:
| Q |
213 |
tggattatttctccttaaatactacctttataactaatttt |
253 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
2376357 |
tggattatttttcccttaatactacctttataactaatttt |
2376397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 444
Target Start/End: Complemental strand, 1522829 - 1522745
Alignment:
| Q |
358 |
caaagggatttacattagctttgacaatgttggggggaaacatgcataaggaaacccttcttaacacgagaaaacgatgttgaagta |
444 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
1522829 |
caaaggcattgacattaactttgacaatgttggggg--aacatgcataaggaaacccttattaacacgagaaaatgttgttgaagta |
1522745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 368
Target Start/End: Complemental strand, 1523785 - 1523727
Alignment:
| Q |
309 |
tgtctgttgaaaggacttcctttgctccctaggtcattcttggaagcttcaaagggattt |
368 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1523785 |
tgtctgttgaaaggacttcctt-gctccctaggtcattcttggaagcttcaaagggattt |
1523727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 453 - 554
Target Start/End: Original strand, 35726310 - 35726413
Alignment:
| Q |
453 |
tttggcactcattcgtgtgcaggat-atacaactttacctcttgcttagtgccgaaattacacaaacgcc-tccatgcacttcaccatattattgcagat |
550 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||||||||||||||| || ||||||| |||||||||||| |||| |||||| ||| ||| ||||||| |
|
|
| T |
35726310 |
tttggcactcattcgtatgcaggctgatgcaactttacctcttgctcagcgccgaaactacacaaacgccttccaggcactttaccgtatcggtgcagat |
35726409 |
T |
|
| Q |
551 |
gaag |
554 |
Q |
| |
|
|||| |
|
|
| T |
35726410 |
gaag |
35726413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University