View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_low_54 (Length: 235)

Name: NF3175_low_54
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_low_54
NF3175_low_54
[»] chr4 (4 HSPs)
chr4 (1-120)||(25574881-25575000)
chr4 (154-220)||(30358778-30358844)
chr4 (161-220)||(1728668-1728727)
chr4 (172-220)||(50562739-50562787)
[»] chr1 (5 HSPs)
chr1 (154-220)||(21255877-21255943)
chr1 (154-220)||(10498194-10498260)
chr1 (154-220)||(20506347-20506413)
chr1 (154-220)||(31084343-31084409)
chr1 (156-220)||(23277007-23277071)
[»] chr8 (5 HSPs)
chr8 (154-220)||(23397384-23397450)
chr8 (150-216)||(34647204-34647270)
chr8 (150-220)||(40022421-40022491)
chr8 (154-220)||(9853197-9853263)
chr8 (154-220)||(35301666-35301732)
[»] chr7 (4 HSPs)
chr7 (154-220)||(48830540-48830606)
chr7 (154-207)||(11732079-11732132)
chr7 (154-201)||(24360715-24360762)
chr7 (172-220)||(5758238-5758286)
[»] chr3 (7 HSPs)
chr3 (154-220)||(41191446-41191512)
chr3 (154-220)||(34562436-34562502)
chr3 (161-220)||(51846064-51846123)
chr3 (172-214)||(23756231-23756273)
chr3 (172-220)||(23700031-23700078)
chr3 (172-220)||(23718486-23718533)
chr3 (172-220)||(23736942-23736989)
[»] chr2 (1 HSPs)
chr2 (154-220)||(41345124-41345190)
[»] chr6 (2 HSPs)
chr6 (154-220)||(7765345-7765411)
chr6 (154-183)||(30909417-30909446)
[»] chr5 (1 HSPs)
chr5 (172-220)||(18464422-18464470)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 25575000 - 25574881
Alignment:
Q  1 tagatctttcttaatagttgaaaacattcnnnnnnnnttgacccactataagcttcaagatgtcagattttctcccagatttcaaagcttggttatatac 100  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25575000 tagatctttcttaatagttgaaaacattcaaaaaaaattgacccactataagcttcaagatgtcagattttctcccagatttcaaagcttggttatatac 25574901  T
Q  101 tgataggcaaatagatgagc 120  Q
    ||||||||||||||||||||    
T  25574900 tgataggcaaatagatgagc 25574881  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 30358844 - 30358778
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  30358844 ataaatcccatttgaaatataattgcttccatacacctccaagcgaaaccaaacgaaacaacactac 30358778  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 1728668 - 1728727
Alignment:
Q  161 ccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||||||||  |||| |||||||| ||| |||| |||| |||||||||||||    
T  1728668 ccatttgaaatataattatttccttacacctctaagggaaaccaaacgaaacaacactac 1728727  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 50562739 - 50562787
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||||||||||||||| ||||| |||| |||| ||||||| |||||    
T  50562739 ataattgcttccctacacccccaagtgaaaccaaacgaaacaaaactac 50562787  T

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Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 21255877 - 21255943
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  21255877 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaaccaaacgaaacaacactac 21255943  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 10498260 - 10498194
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  10498260 ataaatctcatttgaaatataattgcttccctacatctccaagcgaaaccaaacgaaacaacactac 10498194  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 20506347 - 20506413
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||    
T  20506347 ataaatctcatttgaaatataattgcttccctatacctccaagcgaaaccaaacgaaacaacactac 20506413  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 31084409 - 31084343
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  31084409 ataaattccatttgaaatataatagcttccctacacctccaagcgaaaccaaacgaaacaacactac 31084343  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 23277007 - 23277071
Alignment:
Q  156 aaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||    
T  23277007 aaatcccatttgaaatataattgtttccctacacctccaagggaaaccaaacgaaacaacactac 23277071  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 23397450 - 23397384
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  23397450 ataaatcccatttgaaatataattgcttccctacaccttcaagcgaaaccaaacgaaacaacactac 23397384  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 34647204 - 34647270
Alignment:
Q  150 gtgtataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaaca 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  34647204 gtgtataaatctcatttgaaatataattgcttccctacacctccaagcgaaaccaaacgaaacaaca 34647270  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 40022421 - 40022491
Alignment:
Q  150 gtgtataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||    
T  40022421 gtgtataaattccatttgaaatataattgcttccctacatctccaagcgaaaccaaacgaaacaacactac 40022491  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 9853263 - 9853197
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||||    
T  9853263 ataaatcccatttgaaatataattgcttccctatacctccaagcgaaaccaaacgaaacaatactac 9853197  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 35301666 - 35301732
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  35301666 ataaatctcatttgaaatataattgcttccctacacctccaagcgaaaccaaacgaaccaacactac 35301732  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 48830606 - 48830540
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  48830606 ataaattccatttgaaatataattgcttccctacacctccaagcgaaaccaaacgaaacaacactac 48830540  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 11732079 - 11732132
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaa 207  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  11732079 ataaatctcatttgaaatataattgctttcctacacctccaagcgaaaccaaaa 11732132  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 24360762 - 24360715
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaa 201  Q
    ||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  24360762 ataaatctcatttgaaatataattgcttccctacaccttcaaacgaaa 24360715  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 5758286 - 5758238
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||||||||||||||| | |||||||| |||| |||||||||||||    
T  5758286 ataattgcttccctacaccccgaagcgaaaccaaacgaaacaacactac 5758238  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 41191446 - 41191512
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  41191446 ataaatctcatttgaaatataattgcctccctacacctccaagcgaaatcaaacgaaacaacactac 41191512  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 34562436 - 34562502
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  34562436 ataaatctcatttgaaatataattgcttccctacacctccaagcgaaaccaaacgaaacaatactac 34562502  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 51846064 - 51846123
Alignment:
Q  161 ccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||    
T  51846064 ccatttaaaatataattgcttctctacatctccaagcgaaaccaaaagaaacaacactac 51846123  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 23756273 - 23756231
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaa 214  Q
    ||||||||||||||||||| |||||||||| |||| |||||||    
T  23756273 ataattgcttccctacacccccaagcgaaaccaaacgaaacaa 23756231  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 23700078 - 23700031
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  23700078 ataattgcttcc-tacacccccaagcgaaaccaaacgaaacaacactac 23700031  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 23718533 - 23718486
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  23718533 ataattgcttcc-tacacccccaagcgaaaccaaacgaaacaacactac 23718486  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 23736989 - 23736942
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||| |||||| |||||||||| |||| |||||||||||||    
T  23736989 ataattgcttcc-tacacccccaagcgaaaccaaacgaaacaacactac 23736942  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 220
Target Start/End: Original strand, 41345124 - 41345190
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||| |||| |||||||||||||    
T  41345124 ataaattccatttgaaatataattgtttccttacacctccaagcgaaaccaaacgaaacaacactac 41345190  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 7765411 - 7765345
Alignment:
Q  154 ataaatcccatttgaaatataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||| |||||||||||||||||| ||||||||| ||||||| |||| |||| |||||||||||||    
T  7765411 ataaattccatttgaaatataattgtttccctacatctccaagtgaaaccaaacgaaacaacactac 7765345  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 183
Target Start/End: Complemental strand, 30909446 - 30909417
Alignment:
Q  154 ataaatcccatttgaaatataattgcttcc 183  Q
    ||||||||||||||||||||||||||||||    
T  30909446 ataaatcccatttgaaatataattgcttcc 30909417  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 18464422 - 18464470
Alignment:
Q  172 ataattgcttccctacacctccaagcgaaatcaaaagaaacaacactac 220  Q
    |||||||||||| ||||||| |||||||||  ||| |||||||||||||    
T  18464422 ataattgcttccttacaccttcaagcgaaacaaaacgaaacaacactac 18464470  T

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