View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3175_low_60 (Length: 219)

Name: NF3175_low_60
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3175_low_60
NF3175_low_60
[»] chr2 (15 HSPs)
chr2 (16-207)||(8209195-8209385)
chr2 (139-190)||(1208640-1208691)
chr2 (140-181)||(5455877-5455918)
chr2 (140-189)||(28640157-28640206)
chr2 (152-187)||(7261194-7261229)
chr2 (144-178)||(3496806-3496840)
chr2 (144-178)||(11226175-11226209)
chr2 (144-178)||(15141909-15141943)
chr2 (144-178)||(19037074-19037108)
chr2 (151-189)||(21836022-21836060)
chr2 (144-178)||(32832621-32832655)
chr2 (144-178)||(39729015-39729049)
chr2 (144-178)||(41069701-41069735)
chr2 (148-189)||(6752091-6752132)
chr2 (144-189)||(23395962-23396007)
[»] chr8 (12 HSPs)
chr8 (139-189)||(44132890-44132940)
chr8 (138-189)||(20896204-20896255)
chr8 (131-189)||(1898114-1898172)
chr8 (138-188)||(12964353-12964403)
chr8 (140-189)||(41649988-41650037)
chr8 (157-189)||(33681290-33681322)
chr8 (139-187)||(35910604-35910652)
chr8 (139-178)||(42127211-42127250)
chr8 (157-203)||(20224907-20224953)
chr8 (144-178)||(33938620-33938654)
chr8 (138-187)||(41951207-41951256)
chr8 (149-189)||(34799649-34799689)
[»] chr4 (16 HSPs)
chr4 (139-189)||(50041831-50041881)
chr4 (139-189)||(50049053-50049103)
chr4 (139-189)||(52198372-52198422)
chr4 (138-189)||(5052111-5052162)
chr4 (139-188)||(36498617-36498666)
chr4 (138-189)||(30643609-30643660)
chr4 (139-178)||(33913973-33914012)
chr4 (139-186)||(53363692-53363739)
chr4 (148-189)||(44015429-44015470)
chr4 (144-190)||(29544178-29544224)
chr4 (144-178)||(46079368-46079402)
chr4 (148-178)||(47907312-47907342)
chr4 (144-174)||(52673230-52673260)
chr4 (146-178)||(31455922-31455954)
chr4 (139-187)||(43589668-43589716)
chr4 (138-178)||(53176862-53176902)
[»] chr6 (14 HSPs)
chr6 (139-190)||(24226082-24226133)
chr6 (139-183)||(28067336-28067380)
chr6 (139-186)||(6793518-6793565)
chr6 (139-185)||(512767-512813)
chr6 (147-189)||(9976973-9977015)
chr6 (139-189)||(32267035-32267085)
chr6 (144-189)||(6139347-6139392)
chr6 (144-178)||(7506661-7506695)
chr6 (144-178)||(9928290-9928324)
chr6 (144-178)||(22469728-22469762)
chr6 (144-178)||(28963618-28963652)
chr6 (140-177)||(33906583-33906620)
chr6 (149-189)||(457683-457723)
chr6 (158-190)||(13418530-13418562)
[»] chr7 (20 HSPs)
chr7 (140-187)||(22715835-22715882)
chr7 (140-178)||(42691097-42691135)
chr7 (138-190)||(30061158-30061210)
chr7 (140-187)||(27311793-27311840)
chr7 (138-189)||(40591038-40591089)
chr7 (138-184)||(19699881-19699927)
chr7 (138-188)||(32204765-32204815)
chr7 (154-187)||(23021207-23021240)
chr7 (143-178)||(42971671-42971706)
chr7 (138-189)||(43368503-43368554)
chr7 (144-178)||(16876744-16876778)
chr7 (144-178)||(18867955-18867989)
chr7 (144-178)||(23185930-23185964)
chr7 (144-178)||(34328134-34328168)
chr7 (151-189)||(43279244-43279282)
chr7 (157-203)||(44309419-44309465)
chr7 (144-178)||(46425345-46425379)
chr7 (144-181)||(2628461-2628498)
chr7 (139-176)||(38701537-38701574)
chr7 (146-178)||(48379482-48379514)
[»] chr1 (19 HSPs)
chr1 (138-189)||(46325607-46325658)
chr1 (148-189)||(46325446-46325487)
chr1 (138-189)||(3950312-3950363)
chr1 (139-178)||(11872216-11872255)
chr1 (139-174)||(17368428-17368463)
chr1 (139-189)||(19431407-19431457)
chr1 (144-178)||(48915013-48915047)
chr1 (144-178)||(48915203-48915237)
chr1 (144-178)||(48915404-48915438)
chr1 (139-179)||(37719068-37719108)
chr1 (146-189)||(15106239-15106282)
chr1 (144-178)||(27032327-27032361)
chr1 (144-178)||(27907732-27907766)
chr1 (144-178)||(48843405-48843439)
chr1 (144-178)||(51748581-51748615)
chr1 (154-187)||(7537002-7537035)
chr1 (144-177)||(19456339-19456372)
chr1 (142-187)||(26056817-26056862)
chr1 (152-184)||(40717636-40717668)
[»] chr5 (10 HSPs)
chr5 (139-176)||(9956631-9956668)
chr5 (132-189)||(17250484-17250541)
chr5 (135-174)||(33953148-33953187)
chr5 (139-176)||(3622232-3622269)
chr5 (144-189)||(19824613-19824658)
chr5 (154-190)||(28975602-28975638)
chr5 (140-184)||(37484841-37484885)
chr5 (146-189)||(18623603-18623646)
chr5 (150-180)||(8230804-8230834)
chr5 (132-168)||(3622075-3622111)
[»] scaffold0176 (1 HSPs)
scaffold0176 (144-178)||(15120-15154)
[»] chr3 (12 HSPs)
chr3 (144-178)||(39973021-39973055)
chr3 (139-186)||(19138401-19138448)
chr3 (146-177)||(30240899-30240930)
chr3 (144-178)||(4037170-4037204)
chr3 (144-178)||(10688637-10688671)
chr3 (144-178)||(11233535-11233569)
chr3 (147-189)||(34305819-34305861)
chr3 (144-178)||(39994220-39994254)
chr3 (144-178)||(49279518-49279552)
chr3 (138-175)||(5182861-5182898)
chr3 (144-181)||(50700043-50700080)
chr3 (146-178)||(39485498-39485530)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 8209195 - 8209385
Alignment:
Q  16 agtgtgtaggcctttgccctcactatgttaaggattttctttcgatactgcgtacattttatgggttttatttgagtgactttgaatctagtaattttga 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  8209195 agtgtgtaggcctttgccctcactatcttaaggattttctttcgatactgcgtacattttatgggtttcatttgagtgattttgaatctagtaattttga 8209294  T
Q  116 taactttaaatcttacttctagtcaataattctctctcatcaaaataatttattttaatcatttatctatcatttctttttatctaaagtat 207  Q
    |||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || || ||||  |||||||| |||||||    
T  8209295 taactttatatcttactt-taatcaataattctctctcatcaaaataatttattttaatcattcatttaccattcttttttatcaaaagtat 8209385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 1208640 - 1208691
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcattt 190  Q
    ||||||||||||||||| |||||||||||||||||||| | |||||||||||    
T  1208640 caataattctctctcattaaaataatttattttaatcactcatctatcattt 1208691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 5455877 - 5455918
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatttat 181  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  5455877 aataattctctctcaccaaaataatttattttaatcatttat 5455918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 28640206 - 28640157
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| ||||| | ||||||||||||||||||||||||| ||||||||||    
T  28640206 aataactctcttttatcaaaataatttattttaatcattcatctatcatt 28640157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 7261194 - 7261229
Alignment:
Q  152 tcatcaaaataatttattttaatcatttatctatca 187  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7261194 tcatcaaaataatttattttaattatttatctatca 7261229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 3496840 - 3496806
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  3496840 attctctctcatctaaataatttattttaatcatt 3496806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 11226175 - 11226209
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  11226175 attctctctcatctaaataatttattttaatcatt 11226209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 15141909 - 15141943
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  15141909 attctctctcatctaaataatttattttaatcatt 15141943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 19037108 - 19037074
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  19037108 attctctctcatctaaataatttattttaatcatt 19037074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 21836022 - 21836060
Alignment:
Q  151 ctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  21836022 ctcatcaaaataatttattttaatcactcatctatcatt 21836060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 32832655 - 32832621
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  32832655 attctctctcatctaaataatttattttaatcatt 32832621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 39729015 - 39729049
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  39729015 attctctctcatctaaataatttattttaatcatt 39729049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 41069735 - 41069701
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  41069735 attctctctcatctaaataatttattttaatcatt 41069701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 6752132 - 6752091
Alignment:
Q  148 tctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||| ||||||||||||||||||||| || |||||||    
T  6752132 tctctcatctaaataatttattttaatcattcatttatcatt 6752091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 23395962 - 23396007
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||| ||||| ||||||||||||||||||||| || |||||||    
T  23395962 attctctatcatctaaataatttattttaatcattcatttatcatt 23396007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 44132940 - 44132890
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44132940 caataattctctctcatcaaaataatttattttaatcattcatctatcatt 44132890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 20896255 - 20896204
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| ||||||||||||| ||||||||||||||||||||| || |||||||    
T  20896255 tcaatcattctctctcatctaaataatttattttaatcattcatatatcatt 20896204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 1898172 - 1898114
Alignment:
Q  131 cttctagtcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||| || |||||||| | ||||||||||||||||||||||| |||| |||||||    
T  1898172 cttctagttaaaaattctcttttatcaaaataatttattttaatcagttatatatcatt 1898114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 12964353 - 12964403
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcat 188  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || ||||||    
T  12964353 tcaatcattctctttcatcaaaataatttattttaatcattcatatatcat 12964403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 41649988 - 41650037
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||| ||||| ||||||||||||||| ||||||| ||||||||||||    
T  41649988 aataattttctcttatcaaaataatttatcttaatcacttatctatcatt 41650037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 33681322 - 33681290
Alignment:
Q  157 aaaataatttattttaatcatttatctatcatt 189  Q
    |||||||||||||||||||||||||||||||||    
T  33681322 aaaataatttattttaatcatttatctatcatt 33681290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 35910604 - 35910652
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatca 187  Q
    ||||||||| ||||||||||||| |||||||||||||||| || |||||    
T  35910604 caataattccctctcatcaaaatgatttattttaatcattcatttatca 35910652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 42127250 - 42127211
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  42127250 caataattatttctcatcaaaataatttattttaatcatt 42127211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 20224953 - 20224907
Alignment:
Q  157 aaaataatttattttaatcatttatctatcatttctttttatctaaa 203  Q
    |||||||||||||||||| |||||||||||||||  ||| |||||||    
T  20224953 aaaataatttattttaattatttatctatcattttctttaatctaaa 20224907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 33938654 - 33938620
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  33938654 attctctctcatctaaataatttattttaatcatt 33938620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 41951207 - 41951256
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatca 187  Q
    ||||||||||||||||||||| |||||||| |||| ||||| || |||||    
T  41951207 tcaataattctctctcatcaagataatttaatttactcattcatttatca 41951256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 34799689 - 34799649
Alignment:
Q  149 ctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||| ||||| |||||||||||||||||| |||||||    
T  34799689 ctctcatctaaatattttattttaatcatttatttatcatt 34799649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 50041881 - 50041831
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50041881 caataattctctctcatcaaaataatttattttaatcattcatctatcatt 50041831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 50049103 - 50049053
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50049103 caataattctctctcatcaaaataatttattttaatcattcatctatcatt 50049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 52198372 - 52198422
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52198372 caataattatctctcatcaaaataatttattttaatcatttatctatcatt 52198422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 5052111 - 5052162
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  5052111 tcaatcattctctctcatcaaaataatttattttaatcatttatttatcatt 5052162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 36498666 - 36498617
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcat 188  Q
    ||||||||||||| |||||||||||||||||||||||| | |||||||||    
T  36498666 caataattctctcacatcaaaataatttattttaatcactcatctatcat 36498617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 30643660 - 30643609
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  30643660 tcaatcattctctctcatctaaataatttattttaatcattcatccatcatt 30643609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 33913973 - 33914012
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  33913973 caataattctctctcatcaaaatgatttattttaatcatt 33914012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 53363739 - 53363692
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatc 186  Q
    |||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  53363739 caattattctttctcatcaaaataatttattttaattatttatctatc 53363692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 44015470 - 44015429
Alignment:
Q  148 tctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  44015470 tctctcatctaaataatttattttaatcattcatctatcatt 44015429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 29544224 - 29544178
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatttatctatcattt 190  Q
    ||||||| ||||| ||||||||||||||||||||| || ||||||||    
T  29544224 attctctatcatctaaataatttattttaatcattcatttatcattt 29544178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 46079402 - 46079368
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  46079402 attctctctcatctaaataatttattttaatcatt 46079368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 47907312 - 47907342
Alignment:
Q  148 tctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||    
T  47907312 tctctcatcaaaataatttattttaatcatt 47907342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Complemental strand, 52673260 - 52673230
Alignment:
Q  144 attctctctcatcaaaataatttattttaat 174  Q
    |||||||||||||||||||||||||||||||    
T  52673260 attctctctcatcaaaataatttattttaat 52673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 31455954 - 31455922
Alignment:
Q  146 tctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||| |||||||||||||||||||||    
T  31455954 tctctctcatctaaataatttattttaatcatt 31455922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 43589668 - 43589716
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatca 187  Q
    |||| |||||||||||||||| ||||| | ||||||||||||| |||||    
T  43589668 caatcattctctctcatcaaagtaattcagtttaatcatttatgtatca 43589716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 53176862 - 53176902
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatt 178  Q
    ||||| ||| ||||||||| |||||||||||||||||||||    
T  53176862 tcaatcattttctctcatctaaataatttattttaatcatt 53176902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 24226082 - 24226133
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcattt 190  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  24226082 caataattctctgtcatcaaaataatttattttaatcattcatctatcattt 24226133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 28067336 - 28067380
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatct 183  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  28067336 caatcattctctctcatcaaaataatttattttaatcattcatct 28067380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 6793518 - 6793565
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatc 186  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  6793518 caataattatctctcatcaaaataatttattttaatcactcatctatc 6793565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 512767 - 512813
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctat 185  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||    
T  512767 caatatttctctctcatcaaaataatttattttaatcactcatctat 512813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 9977015 - 9976973
Alignment:
Q  147 ctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  9977015 ctctctaatcaaaataatttattttaatcattcatctatcatt 9976973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 32267085 - 32267035
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  32267085 caataattctcttccatcagaataatttattttaatcattaatctatcatt 32267035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 6139347 - 6139392
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||||||| |||||||||||||||||||||| |||| ||||    
T  6139347 attctctctcatctaaataatttattttaatcatttgtctaacatt 6139392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 7506661 - 7506695
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  7506661 attctctctcatctaaataatttattttaatcatt 7506695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 9928290 - 9928324
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  9928290 attctctctcatctaaataatttattttaatcatt 9928324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 22469728 - 22469762
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  22469728 attctctctcatctaaataatttattttaatcatt 22469762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 28963652 - 28963618
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||| ||||||||||||||    
T  28963652 attctctctcatcaaaataagttattttaatcatt 28963618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Complemental strand, 33906620 - 33906583
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcat 177  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  33906620 aataattctctttcatcaaaatcatttattttaatcat 33906583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 457683 - 457723
Alignment:
Q  149 ctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||| ||||||||||||||||||||| ||| ||||||    
T  457683 ctctcatctaaataatttattttaatcattcatccatcatt 457723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 13418562 - 13418530
Alignment:
Q  158 aaataatttattttaatcatttatctatcattt 190  Q
    |||||||||||||||| ||||||||||||||||    
T  13418562 aaataatttattttaaacatttatctatcattt 13418530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 22715882 - 22715835
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatttatctatca 187  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22715882 aataattttctctcgtcaaaataatttattttaatcatttatctatca 22715835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 178
Target Start/End: Complemental strand, 42691135 - 42691097
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42691135 aataattctctctcatcaaaataatttattttaatcatt 42691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 30061210 - 30061158
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcattt 190  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||| |||||||    
T  30061210 tcaataattttctctcatctaaataatttattttaatcatctatcaatcattt 30061158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 27311840 - 27311793
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatttatctatca 187  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  27311840 aataattctctcacatcaaaataaattattttaatcattcatctatca 27311793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 40591038 - 40591089
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||    
T  40591038 tcaattattctctttcatctaaataatttattttaatcatttatctaacatt 40591089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 19699881 - 19699927
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatcta 184  Q
    ||||||||  ||||||||||||||||||||||||||||||| |||||    
T  19699881 tcaataatattctctcatcaaaataatttattttaatcattcatcta 19699927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 32204765 - 32204815
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcat 188  Q
    ||||| ||| ||||||||  |||||||||||||||||||||||||||||||    
T  32204765 tcaatcattatctctcatataaataatttattttaatcatttatctatcat 32204815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 23021207 - 23021240
Alignment:
Q  154 atcaaaataatttattttaatcatttatctatca 187  Q
    ||||||||||||||||||||||||||||||||||    
T  23021207 atcaaaataatttattttaatcatttatctatca 23021240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 42971706 - 42971671
Alignment:
Q  143 aattctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||| |||||||||||||||||||||    
T  42971706 aattctctctcatctaaataatttattttaatcatt 42971671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 43368554 - 43368503
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||||  ||||||| ||||||||||||||||||||| ||| ||||||    
T  43368554 tcaataattcattctcatctaaataatttattttaatcattcatccatcatt 43368503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 16876778 - 16876744
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  16876778 attctctctcatctaaataatttattttaatcatt 16876744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 18867989 - 18867955
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  18867989 attctctctcatctaaataatttattttaatcatt 18867955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 23185964 - 23185930
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  23185964 attctctctcatctaaataatttattttaatcatt 23185930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 34328134 - 34328168
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  34328134 attctctctcatctaaataatttattttaatcatt 34328168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 43279244 - 43279282
Alignment:
Q  151 ctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  43279244 ctcattaaaataatttattttaatcattcatctatcatt 43279282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 44309465 - 44309419
Alignment:
Q  157 aaaataatttattttaatcatttatctatcatttctttttatctaaa 203  Q
    |||||||||||||||||| |||||||||||||||  ||| |||||||    
T  44309465 aaaataatttattttaattatttatctatcattttctttaatctaaa 44309419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 46425379 - 46425345
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  46425379 attctctctcatctaaataatttattttaatcatt 46425345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 2628498 - 2628461
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatttat 181  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  2628498 attctctctcatctaaatagtttattttaatcatttat 2628461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 38701574 - 38701537
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatca 176  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  38701574 caataattctctttcatcaaaataattaattttaatca 38701537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 48379482 - 48379514
Alignment:
Q  146 tctctctcatcaaaataatttattttaatcatt 178  Q
    ||||| |||||||||||||||||||||||||||    
T  48379482 tctctgtcatcaaaataatttattttaatcatt 48379514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 46325658 - 46325607
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| |||||||||||||||||||| |||||||||||||| ||||||||||    
T  46325658 tcaatcattctctctcatcaaaataacttattttaatcattcatctatcatt 46325607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 46325446 - 46325487
Alignment:
Q  148 tctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  46325446 tctctcatcaaaataatttattttaatcattcatctatcatt 46325487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 3950363 - 3950312
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||    
T  3950363 tcaattattctctttcatcaaaataatttattttaatcattcatcgatcatt 3950312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 11872255 - 11872216
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  11872255 caataattctctctcatcaaaataatttattataatcatt 11872216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 17368463 - 17368428
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaat 174  Q
    ||||||||||||||||||||||||||||||||||||    
T  17368463 caataattctctctcatcaaaataatttattttaat 17368428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 19431457 - 19431407
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  19431457 caatcattctctctcatctaaataatttattttaatcattcatccatcatt 19431407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 48915047 - 48915013
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  48915047 attctctctcatcaaaataatttattttaatcatt 48915013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 48915237 - 48915203
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  48915237 attctctctcatcaaaataatttattttaatcatt 48915203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 48915438 - 48915404
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  48915438 attctctctcatcaaaataatttattttaatcatt 48915404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 37719068 - 37719108
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcattt 179  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  37719068 caataattatctctcatcaaaataatttattttattcattt 37719108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 15106239 - 15106282
Alignment:
Q  146 tctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||||  ||||||||||||||||||||| ||||||||||    
T  15106239 tctctctcatgtaaataatttattttaatcattcatctatcatt 15106282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Complemental strand, 27032361 - 27032327
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  27032361 attctctctcatctaaataatttattttaatcatt 27032327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 27907732 - 27907766
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  27907732 attctctctcatctaaataatttattttaatcatt 27907766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 48843405 - 48843439
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  48843405 attctctctcatctaaataatttattttaatcatt 48843439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 51748581 - 51748615
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  51748581 attctctctcatctaaataatttattttaatcatt 51748615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 187
Target Start/End: Complemental strand, 7537035 - 7537002
Alignment:
Q  154 atcaaaataatttattttaatcatttatctatca 187  Q
    |||||||||||||||||||||||||||| |||||    
T  7537035 atcaaaataatttattttaatcatttatatatca 7537002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 19456372 - 19456339
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcat 177  Q
    ||||||||||||| ||||||||||||||||||||    
T  19456372 attctctctcatctaaataatttattttaatcat 19456339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 26056817 - 26056862
Alignment:
Q  142 taattctctctcatcaaaataatttattttaatcatttatctatca 187  Q
    ||||||||| | || |||||||||||||||||| ||||||||||||    
T  26056817 taattctcttttattaaaataatttattttaattatttatctatca 26056862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 40717636 - 40717668
Alignment:
Q  152 tcatcaaaataatttattttaatcatttatcta 184  Q
    ||||||||||||||||||||||| |||||||||    
T  40717636 tcatcaaaataatttattttaattatttatcta 40717668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 9956631 - 9956668
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatca 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9956631 caataattctctctcatcaaaataatttattttaatca 9956668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 17250541 - 17250484
Alignment:
Q  132 ttctagtcaataattctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||| ||||||||||    
T  17250541 ttctaatcaatcattttctctcatcaaaataatttactttaatcattcatctatcatt 17250484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 33953148 - 33953187
Alignment:
Q  135 tagtcaataattctctctcatcaaaataatttattttaat 174  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  33953148 tagtcaataattctctctcatctaaataatttattttaat 33953187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 3622269 - 3622232
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatca 176  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3622269 caataattttctctcatcaaaataatttattttaatca 3622232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 19824613 - 19824658
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  19824613 attctctctcatctaaataatttattttaatcattcatctaacatt 19824658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 28975602 - 28975638
Alignment:
Q  154 atcaaaataatttattttaatcatttatctatcattt 190  Q
    |||||||||||||||||||||||||||| ||||||||    
T  28975602 atcaaaataatttattttaatcatttatttatcattt 28975638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 37484841 - 37484885
Alignment:
Q  140 aataattctctctcatcaaaataatttattttaatcatttatcta 184  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||    
T  37484841 aataattttctttcatcaaaataatttattttaatcattcatcta 37484885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 18623646 - 18623603
Alignment:
Q  146 tctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  18623646 tctctcttatctaaataatttattttaatcattcatctatcatt 18623603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 8230834 - 8230804
Alignment:
Q  150 tctcatcaaaataatttattttaatcattta 180  Q
    |||||||||||||||||||||||||||||||    
T  8230834 tctcatcaaaataatttattttaatcattta 8230804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 3622111 - 3622075
Alignment:
Q  132 ttctagtcaataattctctctcatcaaaataatttat 168  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  3622111 ttctaatcaataattatctctcatcaaaataatttat 3622075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 15120 - 15154
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  15120 attctctctcatcaaaataatttattttaatcatt 15154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 39973021 - 39973055
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    |||||||||||||||||||||||||||||||||||    
T  39973021 attctctctcatcaaaataatttattttaatcatt 39973055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 19138448 - 19138401
Alignment:
Q  139 caataattctctctcatcaaaataatttattttaatcatttatctatc 186  Q
    |||| ||||| ||||||||||||||||| | |||||||||||||||||    
T  19138448 caatcattctttctcatcaaaataatttgtattaatcatttatctatc 19138401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 30240899 - 30240930
Alignment:
Q  146 tctctctcatcaaaataatttattttaatcat 177  Q
    ||||||||||||||||||||||||||||||||    
T  30240899 tctctctcatcaaaataatttattttaatcat 30240930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 4037170 - 4037204
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  4037170 attctctctcatctaaataatttattttaatcatt 4037204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 10688637 - 10688671
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  10688637 attctctctcatctaaataatttattttaatcatt 10688671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 11233535 - 11233569
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  11233535 attctctctcatctaaataatttattttaatcatt 11233569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 34305819 - 34305861
Alignment:
Q  147 ctctctcatcaaaataatttattttaatcatttatctatcatt 189  Q
    |||||||||||||||||| ||||||||||| | ||||||||||    
T  34305819 ctctctcatcaaaataatatattttaatcactcatctatcatt 34305861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 39994220 - 39994254
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  39994220 attctctctcatctaaataatttattttaatcatt 39994254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 49279518 - 49279552
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||||| |||||||||||||||||||||    
T  49279518 attctctctcatctaaataatttattttaatcatt 49279552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 5182861 - 5182898
Alignment:
Q  138 tcaataattctctctcatcaaaataatttattttaatc 175  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  5182861 tcaatcattctctctaatcaaaataatttattttaatc 5182898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 50700043 - 50700080
Alignment:
Q  144 attctctctcatcaaaataatttattttaatcatttat 181  Q
    |||||||||| || ||||||||||||||||||||||||    
T  50700043 attctctctcgtctaaataatttattttaatcatttat 50700080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 39485530 - 39485498
Alignment:
Q  146 tctctctcatcaaaataatttattttaatcatt 178  Q
    ||||||||||| |||||||||||||||||||||    
T  39485530 tctctctcatctaaataatttattttaatcatt 39485498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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