View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_61 (Length: 212)
Name: NF3175_low_61
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_61 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 31603916 - 31603735
Alignment:
| Q |
13 |
agcaaaggatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcatgtttg |
112 |
Q |
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| T |
31603916 |
agcaaaagatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcatgtttg |
31603817 |
T |
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| Q |
113 |
tttagtggactgactgaatggaatgagtatcccgaacttggtcatttgggagacatgttagtgtcttcagattctacttttg |
194 |
Q |
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| T |
31603816 |
tttagtggactgactgaatggaatgagtatcccgaactcggtcatttgggagacatgttagtggcttcagattctacttttg |
31603735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 31578127 - 31577953
Alignment:
| Q |
20 |
gatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcatgtttgtttagtg |
119 |
Q |
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||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31578127 |
gatagtgttgaaatggtaaatgttataaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcaaatttgtttagtg |
31578028 |
T |
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| Q |
120 |
gactgactgaatggaatgagtatcccgaacttggtcatttgggagacatgttagtgtcttcagattctacttttg |
194 |
Q |
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| T |
31578027 |
gattgtctgaatggaatgagtatcctgaacttggtcctattggagacatgttagtggcttcagattctacttttg |
31577953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 31593657 - 31593483
Alignment:
| Q |
20 |
gatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcatgtttgtttagtg |
119 |
Q |
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|||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||| || |
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| T |
31593657 |
gatagtgttgaaatgataaatgttataaagtcacttgaaggttgttttgatttgattttggttggtagaagacatgaatgtgagtcaggtttatttaatg |
31593558 |
T |
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| Q |
120 |
gactgactgaatggaatgagtatcccgaacttggtcatttgggagacatgttagtgtcttcagattctacttttg |
194 |
Q |
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| T |
31593557 |
gattatctgaatggaatgagtatccagaacttggtcctatgggagacatgttagtggcttcagattctacttttg |
31593483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 31562773 - 31562600
Alignment:
| Q |
20 |
gatagtgttgaaatgataaatgctatgaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcatgtttgtttagtg |
119 |
Q |
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||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31562773 |
gatagtgttgaaatggtaaatgttataaggtcacttgaaggttgttttgatttgattttggttggtagaagacatacaagtgagtcaaatttgtttagtg |
31562674 |
T |
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| Q |
120 |
gactgactgaatggaatgagtatcccgaacttggtcatttgggagacatgttagtgtcttcagattctactttt |
193 |
Q |
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|| | ||||||||||||||||||| |||||||||| | | ||||||||| | ||| | ||||||||||||||| |
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| T |
31562673 |
gattttctgaatggaatgagtatcctgaacttggtcctattggagacatgcttgtggcatcagattctactttt |
31562600 |
T |
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