View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3175_low_7 (Length: 559)
Name: NF3175_low_7
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 330
Target Start/End: Original strand, 13886941 - 13887236
Alignment:
| Q |
35 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttatgaagcatatcaccaaatttaatact |
134 |
Q |
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| T |
13886941 |
tatattctccatgtgtttgttgaatacctaagaatgactttttggttagtaccgtattttaagtaaggggtttctgaagcatatcaccaaatttaatact |
13887040 |
T |
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| Q |
135 |
ctctca-gcctta-caaatgattatttgtcaacatgttgatgaattggtcatctcacacatcacatatagtcgatacgttcgaacaacaataaacatatt |
232 |
Q |
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| T |
13887041 |
ctctcaggcctcagctaatgattatttctcaacatgttgatgaattggtcatctcacacatcacatgtagtcgatacgttcgaacaacaataaacatatt |
13887140 |
T |
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| Q |
233 |
tttccataaatggaataaattnnnnnnntgttgattctctctccacaaacatatcttagttgaactatgtgatcataaaataaaatcattagacttaa |
330 |
Q |
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| T |
13887141 |
tttccataaatggattaaatt-aaaaactgtt-attctctctccacaattgtatcatagttcaactatgtgatcctaaaataaaatcattagacttaa |
13887236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 326 - 510
Target Start/End: Original strand, 13888494 - 13888678
Alignment:
| Q |
326 |
cttaattgtcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgcaaataggatcgtgcaaacaacaaaacaa |
425 |
Q |
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| T |
13888494 |
cttaattctcgaataaaaacatttttctcctccgagtcttaaaggccattcattaagtgccactcatttcgtaaataggatcgtgcaaacaacaaaacaa |
13888593 |
T |
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| Q |
426 |
gtggagagaaagatattagttcaatatgatatgagaagaaattcaaattttatattagagattttgatgtcatcactttgagcta |
510 |
Q |
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| T |
13888594 |
gtggagagaaagatagtagttcaatatgatatgagaagaaattcgaattttatattagagattttgatgtcatcactttgagcta |
13888678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 13888708 - 13888745
Alignment:
| Q |
509 |
tagctcatgttggcaaatgatgctttccgatgatgtcc |
546 |
Q |
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| T |
13888708 |
tagctcatgttggcaaatgatgctttccgatgaggtcc |
13888745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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