View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3175_low_8 (Length: 550)
Name: NF3175_low_8
Description: NF3175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3175_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 42079542 - 42080076
Alignment:
| Q |
1 |
catggcctacctttgcaaaagtagatggaactgtaaccatgcgcaatcttaatatgataactatagattttggtagttggaatgctcctttcagatgatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42079542 |
catggcctacctttgcaaaagtagatggaactgtaaccatgcgcatgcttaatgtgataactatagattttggtagctggaatgctcctttcagatgatt |
42079641 |
T |
|
| Q |
101 |
gtgaggaaaataaattctacaaaatggagagaacggttataacactatctattcattgacctcattaagtaatgggtattattggaattcaaaggcgagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079642 |
gtgaggaaaataaattctacaaaatggagagaacagttataacactatctattcattgacctcattaagtaatgggtattattggaattcaaaggcgagt |
42079741 |
T |
|
| Q |
201 |
ggttagttttacatcggatagaaataggcaaaatgaagcaaccagtgtattcaacgccttaaaccaccacgaaggtctagcgcacggtatgtgtacctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |
|
|
| T |
42079742 |
ggttagttttacatcggatagaaataggcaaaatgaagcaaccagtgtattcaacgccttaaaccaccacgaaggtctagcgcacaatatatgtatgtat |
42079841 |
T |
|
| Q |
301 |
gttgtaaacttcgaggtaccaaattcgatttccactgataaaaatgctttgaaccatctgtgcaagatatactactacatagtacacctattggcttcga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42079842 |
gttgtaaacttcgaggtaccaaattcgatttccaccgataaaattgctttgaaccacctgtgcaagatatactactacatagtacacctactggcttcga |
42079941 |
T |
|
| Q |
401 |
acatatttagttgcttcaaactaattgacagtcaaaagatttccatgagaattttagtactactgcagtttagtgatattcatacccagaagaattctag |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079942 |
acatatttagttgcttcaaactaattggcagtcaaaagacttccatgagaattttagtactaccgcagtttagtgatattcatacccagaagaattctag |
42080041 |
T |
|
| Q |
501 |
cgcaagtgattgtgatccattcttctgcataaagt |
535 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42080042 |
cgcaagtgattgtgatctattcttctgcataaagt |
42080076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 161
Target Start/End: Original strand, 42082150 - 42082307
Alignment:
| Q |
4 |
ggcctacctttgcaaaagtagatggaactgtaaccatgcgcaatcttaatatgataactatagattttggtagttggaatgctcctttcagatgattgtg |
103 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |||||| ||||| ||| ||||| || |||||||||||| ||||||| | ||| || |||| | |
|
|
| T |
42082150 |
ggcctacctttgccatagtagatggaactgtaagcatgcggttgattaatgtgaaaactacaggttttggtagttgaaatgctcttgtcaaataattgcg |
42082249 |
T |
|
| Q |
104 |
aggaaaataaattctacaaaatggagagaacggttataacactatctattcattgacc |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
42082250 |
aggaaaataaaatctacaaaatggagagaacatttatagcactatctattcattgacc |
42082307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University