View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3176_high_1 (Length: 884)

Name: NF3176_high_1
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3176_high_1
NF3176_high_1
[»] chr6 (7 HSPs)
chr6 (157-510)||(6126459-6126813)
chr6 (8-86)||(6126884-6126962)
chr6 (394-512)||(16971224-16971342)
chr6 (403-510)||(13832480-13832588)
chr6 (419-511)||(14904645-14904737)
chr6 (425-510)||(26603538-26603623)
chr6 (419-512)||(15826943-15827036)
[»] chr8 (4 HSPs)
chr8 (511-869)||(2099702-2100060)
chr8 (430-511)||(42424128-42424209)
chr8 (427-510)||(41525183-41525266)
chr8 (419-510)||(174983-175074)
[»] chr7 (8 HSPs)
chr7 (394-510)||(11612020-11612136)
chr7 (407-510)||(12847801-12847904)
chr7 (440-513)||(34152951-34153024)
chr7 (440-513)||(34174100-34174173)
chr7 (419-510)||(42729829-42729920)
chr7 (429-510)||(37395740-37395821)
chr7 (426-512)||(32005846-32005932)
chr7 (477-510)||(22054929-22054962)
[»] chr3 (5 HSPs)
chr3 (394-514)||(49391091-49391211)
chr3 (430-509)||(21690350-21690428)
chr3 (439-510)||(50210887-50210958)
chr3 (440-510)||(23091811-23091881)
chr3 (437-510)||(27117682-27117755)
[»] chr1 (4 HSPs)
chr1 (405-512)||(51353161-51353268)
chr1 (438-510)||(41306688-41306760)
chr1 (438-510)||(12705931-12706003)
chr1 (435-508)||(13414162-13414235)
[»] chr5 (4 HSPs)
chr5 (704-819)||(30998008-30998124)
chr5 (753-857)||(30997451-30997555)
chr5 (453-513)||(27184412-27184472)
chr5 (414-511)||(33101737-33101834)
[»] scaffold0062 (1 HSPs)
scaffold0062 (419-510)||(69568-69659)
[»] chr2 (5 HSPs)
chr2 (419-510)||(15721011-15721102)
chr2 (419-510)||(39843116-39843207)
chr2 (424-500)||(24543398-24543474)
chr2 (414-510)||(12412658-12412754)
chr2 (414-510)||(12424718-12424814)
[»] chr4 (3 HSPs)
chr4 (403-513)||(7501922-7502033)
chr4 (431-513)||(5370953-5371035)
chr4 (475-511)||(50860402-50860438)
[»] scaffold0445 (1 HSPs)
scaffold0445 (439-510)||(6442-6513)
[»] scaffold0494 (1 HSPs)
scaffold0494 (435-510)||(583-658)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-179; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 157 - 510
Target Start/End: Complemental strand, 6126813 - 6126459
Alignment:
Q  157 ggatgcaacggtagagagagaggcttgcaagtgagcggcggctgtttcatctcactaagcaatagcagttaataacattagggttacattaaaagtgata 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126813 ggatgcaacggtagagagagaggcttgcaagtgagcggcggctgtttcatctcactaagcaatagcagttaataacattagggttacattaaaagtgata 6126714  T
Q  257 ttgagccacatgtagaaacgtgggtttgggccaaacatatatat-ttaagttaatattgtacccaaacattatttccttttatttattgcaatactacct 355  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126713 ttgagccacatgtagaaacgtgggtttgggccaaacatatatatcttaagttaatattgtacccaaacattatttccttttatttattgcaatactacct 6126614  T
Q  356 attttatatataaatgacttattttctcctnnnnnnnntataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaa 455  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126613 attttatatataaatgacttattttctcctaaaaaaaatataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaa 6126514  T
Q  456 acctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6126513 acctcaaacacatacctttaccggtttaatgtccggtccggttctgattaccttg 6126459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 6126962 - 6126884
Alignment:
Q  8 cagcacagattgagaaatattcaaccaagattgctagaagaagaagaaataattggactgtatgattcgattcaagaag 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6126962 cagcacagattgagaaatattcaaccaagattgctagaagaagaagaaataattggactgtatgattcgattcaagaag 6126884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 394 - 512
Target Start/End: Original strand, 16971224 - 16971342
Alignment:
Q  394 tataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtc 493  Q
    |||||||||  |||||||||||||||||||| |||||||||| | |||||||||||||| |||||  |||||||| ||||| ||||||||||||||||||    
T  16971224 tataaatgagatattttattaaaaacggttcgaccccggttcaatcccggttgaaccttcaaacccgaaacccatgcctttgccggtttaatgtccggtc 16971323  T
Q  494 cggttctgattaccttggt 512  Q
    |||||||||||||||||||    
T  16971324 cggttctgattaccttggt 16971342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 403 - 510
Target Start/End: Complemental strand, 13832588 - 13832480
Alignment:
Q  403 attattttattaaaaacggttcaacccc-ggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctg 501  Q
    ||||||| ||||||  ||||| |||||| ||| | |||||||||||||||  |||||| |||||||| |||  |||||||||||||||||||||||| ||    
T  13832588 attatttaattaaatccggttgaacccccggtccaaccccggttgaacctcaaaaccttaaacccatgcctacaccggtttaatgtccggtccggttttg 13832489  T
Q  502 attaccttg 510  Q
    |||||||||    
T  13832488 attaccttg 13832480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 419 - 511
Target Start/End: Original strand, 14904645 - 14904737
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttgg 511  Q
    ||||| ||||||||||||||||||||||||||||| ||||  |||||| || ||  |||||||||||| |||||||| || | ||||||||||    
T  14904645 cggttgaaccccggttcgaccccggttgaacctttgaaccctaaacccttatctacaccggtttaatgaccggtccgattttaattaccttgg 14904737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 425 - 510
Target Start/End: Original strand, 26603538 - 26603623
Alignment:
Q  425 aaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||||||||  |||||||||| ||| ||||||||  |||||||||||  ||||||| |||||||||||||||| | |||||||||    
T  26603538 aaccccggttgaaccccggttggacccttaaaccttgaacccatacctacaccggttcaatgtccggtccggttttaattaccttg 26603623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 512
Target Start/End: Original strand, 15826943 - 15827036
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttggt 512  Q
    |||||| |||||||||  ||||||||   |||| ||||||| |||||  |||||  ||| |||||||||| ||| ||||||| |||||||||||    
T  15826943 cggttcgaccccggttgaaccccggtcagacctctaaaccttaaacctctacctacaccagtttaatgtctggtacggttctaattaccttggt 15827036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 511 - 869
Target Start/End: Complemental strand, 2100060 - 2099702
Alignment:
Q  511 gttgtaacacaaacaagattttctagcatatgataaaagcatgatggattgtaactcccgaactgcaatgatcggtgttagacaataaaatattgggttt 610  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2100060 gttgtaacacaagcaagattttctagcatatgataaaagcattatggattgtaactcccgaactgcaatgatcggtgttagacaataaaatattggattt 2099961  T
Q  611 aagctattgatattctatgaaatcctaaccgttttgttattatcttttgaaacttagattgttcacatggtatcaagggcatataaaccaggttctgata 710  Q
    ||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||  |||| |||||||||||    
T  2099960 aagttattgatattctatgaaaccctaactgttttgttattctcttttgaaacttagattgttcatatggtatcaagagcatgcaaacgaggttctgata 2099861  T
Q  711 ccatattatgaaatgttaaactagtgtattatttcataatgattcaatagttacaagcttatttataaggagctgagcatgtacaatatgatatagtggg 810  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2099860 ccatattataaaatgtgaaagtagtgtattatttcataatgattcaatagttacaagcttatttataagaagctgagcatgtacaatatgatatagtggg 2099761  T
Q  811 aatgcatcaacatatagaaagggaaaataagctaaactatgttacttagagtctaagtt 869  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2099760 aatgcatcaacatatagaaagggaaaataagctaaactatgttacttagattctaagtt 2099702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 430 - 511
Target Start/End: Original strand, 42424128 - 42424209
Alignment:
Q  430 cggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttgg 511  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  42424128 cggttcgaccccggttgaacctttaaacctcgaacccatgcctttaccggtttgatgttcggtccggttctgattaccttgg 42424209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 427 - 510
Target Start/End: Original strand, 41525183 - 41525266
Alignment:
Q  427 ccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||||||||| ||||||||||||||| || ||| ||||| || || |||||||||||||||||||||||||  ||||||||||    
T  41525183 ccccggttcgatcccggttgaacctttgaagctcgaacccctatctataccggtttaatgtccggtccggtttcgattaccttg 41525266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 419 - 510
Target Start/End: Original strand, 174983 - 175074
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||| ||||| |||||||||||||| ||||||| |||||   |||||| ||||  |||||||  ||||||||||||||| | |||||||||    
T  174983 cggttgaaccctggttcgaccccggtcgaaccttcaaaccctgaacccaaacctacaccggttcgatgtccggtccggttttaattaccttg 175074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 394 - 510
Target Start/End: Complemental strand, 11612136 - 11612020
Alignment:
Q  394 tataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtc 493  Q
    ||||| |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||    
T  11612136 tataattgaattattttattaataacggttcgaccctggttcgaccccggttgaacctttaaacctcgaacccttgcctttaccggtttgatgtccggtc 11612037  T
Q  494 cggttctgattaccttg 510  Q
    |||||||||||||||||    
T  11612036 cggttctgattaccttg 11612020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 407 - 510
Target Start/End: Original strand, 12847801 - 12847904
Alignment:
Q  407 ttttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattac 506  Q
    |||||||||||||||||| |||||||||| || ||||||| ||||| |||||   ||||||| | ||||||||||| || ||||||||||||||||||||    
T  12847801 ttttattaaaaacggttcgaccccggttcaactccggttggaccttcaaaccctgaacccatgcttttaccggtttgatatccggtccggttctgattac 12847900  T
Q  507 cttg 510  Q
    ||||    
T  12847901 cttg 12847904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 34152951 - 34153024
Alignment:
Q  440 ccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttggtt 513  Q
    |||||||||||   |||||| |||||||| |||  |||||||||| ||||||||||||| ||||||||||||||    
T  34152951 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaacgtccggtccggttttgattaccttggtt 34153024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 34174173 - 34174100
Alignment:
Q  440 ccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttggtt 513  Q
    |||||||||||   |||||| |||||||| |||  |||||||||| ||||||||||||| ||||||||||||||    
T  34174173 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaacgtccggtccggttttgattaccttggtt 34174100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 419 - 510
Target Start/End: Original strand, 42729829 - 42729920
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||| ||||||| | | |||||||||||||||  |||||| |||| |||  ||  ||||||||||| |||||||||||| |||||||||||    
T  42729829 cggttgaaccccgatccaaccccggttgaacctcaaaaccttaaacacatgtctccaccggtttaatatccggtccggttttgattaccttg 42729920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 37395821 - 37395740
Alignment:
Q  429 ccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||| ||||||| ||||||||||| ||||   |||||||| ||  ||||||||||  |||||||||||| |||||||||||    
T  37395821 ccggtccgaccccagttgaacctttgaaccctgaacccatatctagaccggtttaaactccggtccggttttgattaccttg 37395740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 32005932 - 32005846
Alignment:
Q  426 accccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttggt 512  Q
    |||||||||  |||||||||  ||||| ||||||| ||||||||  |  ||||||| |||| ||||| ||||| |||||||||||||    
T  32005932 accccggttgaaccccggttcgaccttaaaacctcgaacccataggtacaccggttcaatgaccggttcggttttgattaccttggt 32005846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 510
Target Start/End: Complemental strand, 22054962 - 22054929
Alignment:
Q  477 cggtttaatgtccggtccggttctgattaccttg 510  Q
    |||||||||||||||||||||| |||||||||||    
T  22054962 cggtttaatgtccggtccggttttgattaccttg 22054929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 3e-35; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 394 - 514
Target Start/End: Complemental strand, 49391211 - 49391091
Alignment:
Q  394 tataaatgaattattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtc 493  Q
    |||||||||  |||||||||||||||||||  ||| |||||| |||||||||||||||| ||||| ||||||||| |||||  |||||||||||||||||    
T  49391211 tataaatgagatattttattaaaaacggtttgacctcggttcaaccccggttgaaccttcaaaccccaaacccatgcctttgtcggtttaatgtccggtc 49391112  T
Q  494 cggttctgattaccttggttg 514  Q
    |||||||||||||||||||||    
T  49391111 cggttctgattaccttggttg 49391091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 430 - 509
Target Start/End: Complemental strand, 21690428 - 21690350
Alignment:
Q  430 cggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattacctt 509  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  21690428 cggttcgaccc-ggttcaacctttaaaccttaaacccatacctttaccgatttgatgtccggtccggttctgattacctt 21690350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 50210958 - 50210887
Alignment:
Q  439 cccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||||||||| | ||||||||| ||||||||  | ||||||||| ||||||||||||||| |||||||||||    
T  50210958 cccggttgaatccttaaacctcgaacccataggtataccggttttatgtccggtccggttttgattaccttg 50210887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 510
Target Start/End: Original strand, 23091811 - 23091881
Alignment:
Q  440 ccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||||||||||   |||||| |||||||| |||  |||||||||||||||||||||||| |||||||||||    
T  23091811 ccggttgaaccccaaaaccttaaacccatgcctacaccggtttaatgtccggtccggttttgattaccttg 23091881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 437 - 510
Target Start/End: Complemental strand, 27117755 - 27117682
Alignment:
Q  437 accccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||| |||| |||| |||||||| |||| ||||||   || |||||||||||||||||| || |||||||||||    
T  27117755 accctggttcaacccttaaaccttaaactcataccaacactggtttaatgtccggtccgattttgattaccttg 27117682  T

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Target: chr1 (Bit Score: 68; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 405 - 512
Target Start/End: Complemental strand, 51353268 - 51353161
Alignment:
Q  405 tattttattaaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgatt 504  Q
    |||||||||||||| ||||| |||||||||| |||||||||| ||||| |||||   ||||||| ||||||||||||| |||||||||||||||||||||    
T  51353268 tattttattaaaaatggttcgaccccggttcaaccccggttggaccttcaaaccctgaacccatgcctttaccggtttgatgtccggtccggttctgatt 51353169  T
Q  505 accttggt 512  Q
    ||||||||    
T  51353168 accttggt 51353161  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 41306760 - 41306688
Alignment:
Q  438 ccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||||||||||||| ||||||| |||||||| ||| |||||||||| |||||||||||||| |||||||||||    
T  41306760 ccccggttgaacctctaaaccttaaacccatgcctataccggtttattgtccggtccggttttgattaccttg 41306688  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 438 - 510
Target Start/End: Original strand, 12705931 - 12706003
Alignment:
Q  438 ccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||| ||||||||| ||||||| |||||||| ||| || ||||||| ||||||||| |||| |||||||||||    
T  12705931 ccccagttgaacctctaaaccttaaacccatgcctatatcggtttattgtccggtctggttttgattaccttg 12706003  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 508
Target Start/End: Complemental strand, 13414235 - 13414162
Alignment:
Q  435 cgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattacct 508  Q
    ||||||||||||||||||| ||||   ||||||||  |  ||||||||||  |||||||||||| |||||||||    
T  13414235 cgaccccggttgaacctttgaaccctgaacccatatttagaccggtttaaactccggtccggttttgattacct 13414162  T

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Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 704 - 819
Target Start/End: Original strand, 30998008 - 30998124
Alignment:
Q  704 tctgataccatattatgaaatgtt-aaactagtgtattatttcataatgattcaatagttacaagcttatttataaggagctgagcatgtacaatatgat 802  Q
    |||||||||||||||||||||    ||| |||||||||||| ||||||||||||||||||||| ||||||||||| | || |||||||| |||||| |      
T  30998008 tctgataccatattatgaaatcaggaaaatagtgtattattgcataatgattcaatagttacatgcttatttataggtagttgagcatgcacaataggtc 30998107  T
Q  803 atagtgggaatgcatca 819  Q
    |  ||||||||||||||    
T  30998108 acggtgggaatgcatca 30998124  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 753 - 857
Target Start/End: Original strand, 30997451 - 30997555
Alignment:
Q  753 ttcaatagttacaagcttatttataaggagctgagcatgtacaatatgatatagtgggaatgcatcaacatatagaaagggaaaataagctaaactatgt 852  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||| | || |||||||||||||||   |||   || ||||| |||||||| ||||||    
T  30997451 ttcaatagttacaagcttatttataggtagctgagcatgcacaataggttacagtgggaatgcatcaggttattataaaggaaactaagctaagctatgt 30997550  T
Q  853 tactt 857  Q
    |||||    
T  30997551 tactt 30997555  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 453 - 513
Target Start/End: Original strand, 27184412 - 27184472
Alignment:
Q  453 taaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttggtt 513  Q
    ||||||| ||||||||  || |||||||| ||||||||||||| || ||||||||||||||    
T  27184412 taaaccttaaacccatgactataccggttcaatgtccggtccgattttgattaccttggtt 27184472  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 511
Target Start/End: Original strand, 33101737 - 33101834
Alignment:
Q  414 aaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttgg 511  Q
    |||| ||||| |||||||||||||| ||| | ||||||| |||||   |||||| ||||  | |||||  ||||||||||||||| | ||||||||||    
T  33101737 aaaaccggttgaaccccggttcgactccgatcgaaccttcaaaccctgaacccaaacctacatcggttcgatgtccggtccggttttaattaccttgg 33101834  T

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Target: scaffold0062 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 419 - 510
Target Start/End: Original strand, 69568 - 69659
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||| ||||||||| | |||||||||||||||  |||||| ||||||||  ||  |||||||||||||||||||||||| |||||||||||    
T  69568 cggttgaaccccggtccaaccccggttgaacctcaaaaccttaaacccatgtctccaccggtttaatgtccggtccggttttgattaccttg 69659  T

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Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 419 - 510
Target Start/End: Original strand, 15721011 - 15721102
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||| ||||||||| | |||||||||||||||  |||||| ||||||||  ||  |||||||||||||||||||||||| |||||||||||    
T  15721011 cggttgaaccccggtccaaccccggttgaacctcaaaaccttaaacccatgtctccaccggtttaatgtccggtccggttttgattaccttg 15721102  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 419 - 510
Target Start/End: Complemental strand, 39843207 - 39843116
Alignment:
Q  419 cggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||| |||| |||||| ||||||||||||||   |||||| |||||||| |||  | |||||||| ||||||||||||| |||||||||||    
T  39843207 cggttgaacctcggttcaaccccggttgaaccccaaaaccttaaacccatgcctacatcggtttaacgtccggtccggttttgattaccttg 39843116  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 500
Target Start/End: Complemental strand, 24543474 - 24543398
Alignment:
Q  424 caaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttct 500  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||| |  |||||||| ||| ||| |||| ||||    
T  24543474 caacctcggttcgaccccggtcgaacctttaaacctcaaacccctacttgcaccggtttcatgaccgatccgattct 24543398  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 12412658 - 12412754
Alignment:
Q  414 aaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||| ||||| |||||||||||||| ||||| |||||||  ||||   |||||| ||||  |||||||  ||||||||||||||| | |||||||||    
T  12412658 aaaaccggttgaaccccggttcgactccggtcgaaccttcgaaccctgaacccaaacctacaccggttcgatgtccggtccggttttaattaccttg 12412754  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 414 - 510
Target Start/End: Original strand, 12424718 - 12424814
Alignment:
Q  414 aaaaacggttcaaccccggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||| ||||| |||||||||||||| ||||| |||||||  ||||   |||||| ||||  |||||||  ||||||||||||||| | |||||||||    
T  12424718 aaaaccggttgaaccccggttcgactccggtcgaaccttcgaaccctgaacccaaacctacaccggttcgatgtccggtccggttttaattaccttg 12424814  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 403 - 513
Target Start/End: Original strand, 7501922 - 7502033
Alignment:
Q  403 attattttattaaaaacggttcaacccc-ggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctg 501  Q
    ||||||| ||||||  ||||| |||||| ||| | |||||| ||||||||  |||||| |||||||| |||  |||| ||||||||||||||||||| ||    
T  7501922 attatttaattaaatccggttgaacccccggtccaaccccgattgaacctcaaaaccttaaacccatgcctacaccgatttaatgtccggtccggttttg 7502021  T
Q  502 attaccttggtt 513  Q
    ||||||||||||    
T  7502022 attaccttggtt 7502033  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 513
Target Start/End: Original strand, 5370953 - 5371035
Alignment:
Q  431 ggttcgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttggtt 513  Q
    ||||| |||||| ||||||||  |||||| ||||||   |||| | |||||||||||||||||| ||||||||||||||||||    
T  5370953 ggttcaaccccgattgaacctcaaaaccttaaaccctctccttcatcggtttaatgtccggtccagttctgattaccttggtt 5371035  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 50860402 - 50860438
Alignment:
Q  475 accggtttaatgtccggtccggttctgattaccttgg 511  Q
    |||||||||||||||||||||||| ||||||||||||    
T  50860402 accggtttaatgtccggtccggttttgattaccttgg 50860438  T

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Target: scaffold0445 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 439 - 510
Target Start/End: Complemental strand, 6513 - 6442
Alignment:
Q  439 cccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    |||||||||||||  |||||| |||||||| |||  || ||||||||||||||||||||| |||||||||||    
T  6513 cccggttgaacctcaaaaccttaaacccatgcctacacgggtttaatgtccggtccggttttgattaccttg 6442  T

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Target: scaffold0494 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 435 - 510
Target Start/End: Complemental strand, 658 - 583
Alignment:
Q  435 cgaccccggttgaacctttaaacctcaaacccatacctttaccggtttaatgtccggtccggttctgattaccttg 510  Q
    ||||||||||||||||||| ||||   |||||||| ||  ||||||||||  |||||||||||| |||||||||||    
T  658 cgaccccggttgaacctttgaaccctgaacccatatctaaaccggtttaaactccggtccggttttgattaccttg 583  T

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