View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_10 (Length: 521)
Name: NF3176_high_10
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 364 - 510
Target Start/End: Original strand, 40105018 - 40105164
Alignment:
| Q |
364 |
agaggcataagatgagttgccgacgtgcttacttgtcccaataaaataataaattataataaatgagatcaaattccaggacccactttgatgtaataat |
463 |
Q |
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| T |
40105018 |
agaggcataagatgagttgccgacgtgcttacttgtcccaataaaataataaattataataaatgagatcaaattccaggacccactttgatgtaataat |
40105117 |
T |
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| Q |
464 |
tagcatcaaaatcaagataatctcacttcttaacacagtttcttcat |
510 |
Q |
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| T |
40105118 |
tagcatcaaaatcaagataatctcacttcttaacacagtttcttcat |
40105164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 195 - 344
Target Start/End: Original strand, 40104884 - 40105033
Alignment:
| Q |
195 |
caataatccatctaacatgaatcatgaatgtcactttcaagacgaaaagtaaatgagcatatcttactcaagagtatgnnnnnnnnnnnnnnnnntaagt |
294 |
Q |
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| T |
40104884 |
caataatccatctaacatgaatcatgaatgtcactttcaagacgaaaagtaaatgagcatatcttactcaagagtatgaaaaaataaataaaaaataagt |
40104983 |
T |
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| Q |
295 |
gaacattgtttaatcaagcgtccacgtgaatgatagaggcataagatgag |
344 |
Q |
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| T |
40104984 |
gaacattgtttaatcaagcgtccacgtgaatggtagaggcataagatgag |
40105033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 40104714 - 40104764
Alignment:
| Q |
21 |
aatgtgatcgaaatgttacctatagaattagaatttgacttggctaacaca |
71 |
Q |
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| T |
40104714 |
aatgtgatcgaaatgtcacctatagaattagaatttgacttggctaacaca |
40104764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 40104772 - 40104806
Alignment:
| Q |
90 |
atataagactgttcaacaacatatgactggtcatt |
124 |
Q |
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| T |
40104772 |
atataagactgttcaacaacatatgactggtcatt |
40104806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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