View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_20 (Length: 337)
Name: NF3176_high_20
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 31610056 - 31610360
Alignment:
| Q |
18 |
acaaacgcattccaaaaag--tgtgatcaaaagcaaccccaaatatatgtgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttggg |
115 |
Q |
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|||||||| ||| |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||||| |
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| T |
31610056 |
acaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgtcttgttgaaagttccatattttgtagttgttgttcttatttggg |
31610155 |
T |
|
| Q |
116 |
ttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattcttttttactactagttctgctgctagactggttgcnnnnnn |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||| |
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| T |
31610156 |
ttcaacttctgatattttagatggttgctgaatctatcttagtgtgatcgattgtattcttttttactactagttctgctgctggattggtttgcttttt |
31610255 |
T |
|
| Q |
216 |
ngcttagcggttcatgtttagtgtcatagctagtgttgtattgctagtcttagtggtagccattgatggatgtggtctttgtacctccattggcaggtgt |
315 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31610256 |
tgcttagcagttcatgtttagtgtcatagctagcgttgtatagctagtcttagtggtagccattgatagatgtggtctttgtacctccattggcaggtgt |
31610355 |
T |
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| Q |
316 |
gttct |
320 |
Q |
| |
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||||| |
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| T |
31610356 |
gttct |
31610360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 9446986 - 9447275
Alignment:
| Q |
17 |
cacaaacgcattccaaaaag--tgtgatcaaaagcaaccccaaatatatgtgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttgg |
114 |
Q |
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||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
9446986 |
cacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgtcttgttgaaagttccatatcttgcagttgttgttcttatgtgg |
9447085 |
T |
|
| Q |
115 |
gttcaacttctgttattttagatggttgctgaatctatctta-gtgggatagattgtattcttttttactactagttctgctgctagactggttgcnnnn |
213 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||||||||| | |||||| |||||| || ||||||||||||||||| ||||| |||||||| |
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| T |
9447086 |
gttcaacttctgttattttggatggtggctgaatctatcttaggggggatatattgtactc-tttttactactagttctactgctggactggtt---tgc |
9447181 |
T |
|
| Q |
214 |
nnngcttagcggttcatgtttagtgtcatagctagtgttgtattgctagtcttagtggtagccattgatggatgtggtctttgtacctccattggcaggt |
313 |
Q |
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||||||| ||||||| |||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9447182 |
tttgcttagcagttcatg-ttagtgtcttagcttgtgttgtat------------aggtagccattgatggatttggtctttgtacctccattggcaggt |
9447268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 31320268 - 31320430
Alignment:
| Q |
18 |
acaaacgcattccaaaaag--tgtgatcaaaagcaaccccaaatatatgtgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttggg |
115 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31320268 |
acaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgattgtcttgttgaaagttccatatcttgcagttgttgttcttatttggg |
31320367 |
T |
|
| Q |
116 |
ttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattctttt |
178 |
Q |
| |
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|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320368 |
ttcatcttctgctattctagatggttgctgaatctatcttagtgggatagattgtattctttt |
31320430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 258 - 323
Target Start/End: Original strand, 31320517 - 31320583
Alignment:
| Q |
258 |
gctagtctta-gtggtagccattgatggatgtggtctttgtacctccattggcaggtgtgttctttt |
323 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
31320517 |
gctagtcttacgtggtagccattgttggatgtggtctttgtacctccattggaaggggtgttctttt |
31320583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 38346657 - 38346612
Alignment:
| Q |
122 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
167 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
38346657 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
38346612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 14555907 - 14555960
Alignment:
| Q |
18 |
acaaacgcattccaaaaag--tgtgatcaaaagcaaccccaaatatatgtgact |
69 |
Q |
| |
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|||||| | |||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
14555907 |
acaaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgact |
14555960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 18438652 - 18438790
Alignment:
| Q |
65 |
tgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttgggttcaacttctgttattttagatggttgctgaatctatcttagtgggata |
164 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18438652 |
tgactgtcttgttgaaagttccatatcttgcagttg---ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggata |
18438748 |
T |
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| Q |
165 |
gattgtattcttttttactactagttctgctgctagactggtt |
207 |
Q |
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|||||||||| ||||||||||||| |||| |||| || ||||| |
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| T |
18438749 |
gattgtattc-tttttactactagatctgttgctggaatggtt |
18438790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 18449510 - 18449648
Alignment:
| Q |
65 |
tgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttgggttcaacttctgttattttagatggttgctgaatctatcttagtgggata |
164 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18449510 |
tgactgtcttgttgaaagttccatatcttgcagttg---ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggata |
18449606 |
T |
|
| Q |
165 |
gattgtattcttttttactactagttctgctgctagactggtt |
207 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||| || ||||| |
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| T |
18449607 |
gattgtattc-tttttactactagatctgttgctggaatggtt |
18449648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 65 - 207
Target Start/End: Original strand, 18454603 - 18454741
Alignment:
| Q |
65 |
tgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttgggttcaacttctgttattttagatggttgctgaatctatcttagtgggata |
164 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18454603 |
tgactgtcttgttgaaagttccatatcttgcagttg---ttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggata |
18454699 |
T |
|
| Q |
165 |
gattgtattcttttttactactagttctgctgctagactggtt |
207 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||| || ||||| |
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| T |
18454700 |
gattgtattc-tttttactactagatctgttgctggaatggtt |
18454741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 30559391 - 30559269
Alignment:
| Q |
36 |
gtgtgatcaaaagcaaccccaaatatatgtgactgtcttgttgaaagttccaaatcttgcagttgttgttcttatttgggttcaacttctgttattttag |
135 |
Q |
| |
|
|||| ||||||||||| |||||| || |||||| ||| |||||| ||||| || |||||||| ||||| ||||||| ||| ||||||||||||| | |
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| T |
30559391 |
gtgttatcaaaagcaatcccaaagatttgtgacggtcatgttgacagttctgtattctgcagttgctgttcatatttggtttcggcttctgttattttgg |
30559292 |
T |
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| Q |
136 |
atggttgctgaatctatcttagt |
158 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30559291 |
gtggttgctgaatctatcttagt |
30559269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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