View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3176_high_23 (Length: 306)

Name: NF3176_high_23
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3176_high_23
NF3176_high_23
[»] chr4 (8 HSPs)
chr4 (2-293)||(4227822-4228113)
chr4 (172-211)||(4235417-4235456)
chr4 (175-216)||(18878281-18878322)
chr4 (172-224)||(27066330-27066382)
chr4 (172-224)||(27087431-27087483)
chr4 (175-214)||(33480499-33480538)
chr4 (175-220)||(16582326-16582371)
chr4 (174-211)||(54886602-54886639)
[»] chr8 (7 HSPs)
chr8 (172-220)||(27978849-27978897)
chr8 (172-220)||(28036118-28036166)
chr8 (174-211)||(13700133-13700170)
chr8 (175-211)||(22897968-22898004)
chr8 (172-207)||(34723854-34723889)
chr8 (172-211)||(37590034-37590073)
chr8 (175-224)||(9530636-9530685)
[»] chr5 (4 HSPs)
chr5 (172-220)||(16088655-16088703)
chr5 (172-211)||(2157774-2157813)
chr5 (172-220)||(18759819-18759867)
chr5 (172-220)||(29754942-29754990)
[»] chr1 (7 HSPs)
chr1 (172-220)||(21701461-21701509)
chr1 (174-215)||(26333612-26333653)
chr1 (172-223)||(47726367-47726418)
chr1 (172-223)||(47747673-47747724)
chr1 (175-212)||(28385218-28385255)
chr1 (175-211)||(38488868-38488904)
chr1 (172-220)||(49372422-49372470)
[»] chr7 (9 HSPs)
chr7 (172-220)||(41601537-41601585)
chr7 (172-211)||(8118796-8118835)
chr7 (172-211)||(13014960-13014999)
chr7 (172-211)||(15633333-15633372)
chr7 (172-211)||(32480319-32480358)
chr7 (172-211)||(47081649-47081688)
chr7 (174-220)||(3896571-3896617)
chr7 (173-211)||(44675449-44675487)
chr7 (174-211)||(42510034-42510071)
[»] chr3 (11 HSPs)
chr3 (174-214)||(12526582-12526622)
chr3 (172-220)||(31809266-31809314)
chr3 (175-211)||(16877967-16878003)
chr3 (172-211)||(8566118-8566157)
chr3 (172-211)||(16739427-16739466)
chr3 (176-214)||(45004297-45004335)
chr3 (174-211)||(42626151-42626188)
chr3 (178-223)||(53437645-53437690)
chr3 (175-224)||(54561488-54561537)
chr3 (172-220)||(31935344-31935392)
chr3 (174-214)||(49499516-49499556)
[»] chr6 (5 HSPs)
chr6 (172-211)||(9959331-9959370)
chr6 (172-224)||(34355728-34355780)
chr6 (172-211)||(31029232-31029271)
chr6 (175-211)||(6695686-6695722)
chr6 (172-220)||(30140926-30140974)
[»] scaffold0789 (1 HSPs)
scaffold0789 (175-220)||(4204-4249)
[»] chr2 (1 HSPs)
chr2 (172-220)||(23379972-23380020)
[»] scaffold0040 (1 HSPs)
scaffold0040 (172-211)||(62485-62524)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 293
Target Start/End: Complemental strand, 4228113 - 4227822
Alignment:
Q  2 agagatatttgaatgagttcactgaaaaacacataaatagagaaggttctctcaataggatctccgatcctagtaacactgactttctataacttagcat 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4228113 agagatatttgaatgagttcactgaaaaacacataaatagagaaggttctctcaataggatctccgatcctagtaacactgactttctataacttagcac 4228014  T
Q  102 aatttatcatacagagacagacagtccaaaacacacataaccacaaacacataaccgccgtttattatggcaattgtattgaaactattatgattaatga 201  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4228013 aatttatcatacacagacagacagtccaaaacacacataaccacaaacacataaccgccgtttattatgacaattgtattgaaactattatgattaatga 4227914  T
Q  202 aatgctataaacacgtttctctcnnnnnnnnnnnnnnggattcataattgaaaataaatacattcaaaaccaatatttacgatacagttttt 293  Q
    |||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4227913 aatgctataaacacgtttctctcaaaaaaaaaaaaaaagattcataattgaaaataaatacattcaaaaccaatatttacgatacagttttt 4227822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 4235417 - 4235456
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4235417 caattgtattgagactattatgattaatgaaatgctataa 4235456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 18878281 - 18878322
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaacacg 216  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  18878281 ttgtattgaaactattattattaatgaaatgctataagcacg 18878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 27066382 - 27066330
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttctctc 224  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||||||    
T  27066382 caattgtattgaaactttgattattaatgaaatgctataagcacatttctctc 27066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 27087483 - 27087431
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttctctc 224  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||||||    
T  27087483 caattgtattgaaactttgattattaatgaaatgctataagcacatttctctc 27087431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 33480499 - 33480538
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaaca 214  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  33480499 ttgtattgaatctattattattaatgaaatgctataaaca 33480538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 16582371 - 16582326
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||||| |||||||| ||||||||| || |||||    
T  16582371 ttgtattgaaactattattattaatgatatgctataatcatgtttc 16582326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 54886602 - 54886639
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  54886602 attgtattgaatctattatcattaatgaaatgctataa 54886639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 27978849 - 27978897
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  27978849 caattttattgaaactattatgattaatgaaatgttataaacacgtttc 27978897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 28036118 - 28036166
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  28036118 caattttattgaaactattatgattaatgaaatgttataaacacgtttc 28036166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 13700170 - 13700133
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13700170 attgtattgaaactattattattaatgaaatgctataa 13700133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 22897968 - 22898004
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22897968 ttgtattgaaactattattattaatgaaatgctataa 22898004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 34723889 - 34723854
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgct 207  Q
    ||||||||||||| ||||||||||||||||||||||    
T  34723889 caattgtattgaatctattatgattaatgaaatgct 34723854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 37590073 - 37590034
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  37590073 caattgtattgaaactcttattattaatgaaatgctataa 37590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 9530636 - 9530685
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaacacgtttctctc 224  Q
    ||||||||||  |||||| |||||||||||||||||| ||| ||||||||    
T  9530636 ttgtattgaacatattatcattaatgaaatgctataagcacttttctctc 9530685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 16088655 - 16088703
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  16088655 caattatattgaaactattatgattaatgaaatgctataagcacgtttc 16088703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 2157813 - 2157774
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  2157813 caattgtattgaaactattattatcaatgaaatgctataa 2157774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 18759819 - 18759867
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    ||||| |||||||||| |||| |||||||||||||||||| || |||||    
T  18759819 caattatattgaaacttttattattaatgaaatgctataagcatgtttc 18759867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 29754990 - 29754942
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||    
T  29754990 caattgtattgaaactttgattattaatgaaatgctataagcacctttc 29754942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 21701509 - 21701461
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  21701509 caattgtattgaaactcttatgattaatgaaatgctataagcacgtttc 21701461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 26333653 - 26333612
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataaacac 215  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  26333653 attgtattgaaattattatcattaatgaaatgctataaacac 26333612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 47726367 - 47726418
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttctct 223  Q
    |||||||||||||||| | || | |||||||||||||||||||| |||||||    
T  47726367 caattgtattgaaactttgattactaatgaaatgctataaacacttttctct 47726418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 47747673 - 47747724
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttctct 223  Q
    |||||||||||||||| | || | |||||||||||||||||||| |||||||    
T  47747673 caattgtattgaaactttgattactaatgaaatgctataaacacttttctct 47747724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 28385218 - 28385255
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaa 212  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  28385218 ttgtattgaaactattattattaatgaaatgttataaa 28385255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 38488904 - 38488868
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  38488904 ttgtattgaaattattattattaatgaaatgctataa 38488868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 49372422 - 49372470
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||| |||| || ||||||||||||||| || |||||    
T  49372422 caattgtattgaaactcttattatcaatgaaatgctataagcaagtttc 49372470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 41601537 - 41601585
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  41601537 caattgtattgaaactattatgatgagtgaaatgctataagcacgtttc 41601585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 8118835 - 8118796
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  8118835 caattgtattgagactattatgatcaatgaaatgctataa 8118796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 13014999 - 13014960
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  13014999 caattgtattgaaactattattatcaatgaaatgctataa 13014960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 15633333 - 15633372
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15633333 caattgtattgaaactattattatcaatgaaatgctataa 15633372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 32480319 - 32480358
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  32480319 caattgtattgaaactcttattattaatgaaatgctataa 32480358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 47081688 - 47081649
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  47081688 caattgtattgagactattatgatcaatgaaatgctataa 47081649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 3896571 - 3896617
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||| |||| |||||||||||||||||| || |||||    
T  3896571 attgtattgaaactcttattattaatgaaatgctataagcatgtttc 3896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 44675449 - 44675487
Alignment:
Q  173 aattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||| ||||| ||||||||||||||||||    
T  44675449 aattgtattgaaacgattattattaatgaaatgctataa 44675487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 42510071 - 42510034
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  42510071 attgtattgaaactattatcattaatgaaatgttataa 42510034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 12526622 - 12526582
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataaaca 214  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  12526622 attgtattgaaactattattattaatgaaatgctataaaca 12526582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 31809266 - 31809314
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||| |||||||| ||||||||||||||||||||| |||||    
T  31809266 caattgtattgagactattataattaatgaaatgctataaacatgtttc 31809314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 16878003 - 16877967
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16878003 ttgtattgaaactattattattaatgaaatgctataa 16877967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 8566118 - 8566157
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  8566118 caattgtattgagactattatgatcaatgaaatgctataa 8566157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 16739466 - 16739427
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  16739466 caattgtattgaaactattattatcaatgaaatgctataa 16739427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 45004297 - 45004335
Alignment:
Q  176 tgtattgaaactattatgattaatgaaatgctataaaca 214  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  45004297 tgtattgaacctattattattaatgaaatgctataaaca 45004335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 42626151 - 42626188
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataa 211  Q
    ||||||||||||||||||| |||||| |||||||||||    
T  42626151 attgtattgaaactattattattaataaaatgctataa 42626188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 53437645 - 53437690
Alignment:
Q  178 tattgaaactattatgattaatgaaatgctataaacacgtttctct 223  Q
    |||||||||| |||| |||||||||||||||||| || ||||||||    
T  53437645 tattgaaactcttattattaatgaaatgctataagcatgtttctct 53437690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 54561537 - 54561488
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaacacgtttctctc 224  Q
    |||||||||| ||||||| |||||| ||||||||||| ||| ||||||||    
T  54561537 ttgtattgaatctattattattaatcaaatgctataagcacatttctctc 54561488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 31935344 - 31935392
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    ||||||||||||| || | ||||||||||||||||| ||| ||||||||    
T  31935344 caattgtattgaatctttgatgattaatgaaatgctctaagcacgtttc 31935392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 49499516 - 49499556
Alignment:
Q  174 attgtattgaaactattatgattaatgaaatgctataaaca 214  Q
    ||||||||||| || |||| |||||||||||||||||||||    
T  49499516 attgtattgaatctcttattattaatgaaatgctataaaca 49499556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 9959331 - 9959370
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  9959331 caattgtattgagactattatgattaatgaaatgctataa 9959370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 34355780 - 34355728
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttctctc 224  Q
    |||||||||||||||| |||| || ||||||||||||||| || |||||||||    
T  34355780 caattgtattgaaactcttattatcaatgaaatgctataagcatgtttctctc 34355728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 31029232 - 31029271
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  31029232 caattgtattgagactattatgatcaatgaaatgctataa 31029271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 6695686 - 6695722
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||||||| |||||||||||| |||||    
T  6695686 ttgtattgaaactattatcattaatgaaatgttataa 6695722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 30140974 - 30140926
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||| | || |||||||||||||||||| ||| ||||    
T  30140974 caattgtattgaaactttgattattaatgaaatgctataagcacttttc 30140926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0789 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0789
Description:

Target: scaffold0789; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 4249 - 4204
Alignment:
Q  175 ttgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    |||||||||||||||||| || ||||||||||||||| ||||||||    
T  4249 ttgtattgaaactattattatcaatgaaatgctataagcacgtttc 4204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 23379972 - 23380020
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataaacacgtttc 220  Q
    ||||||||||||||||||||| |||||||||||| ||||| || |||||    
T  23379972 caattgtattgaaactattattattaatgaaatgttataagcatgtttc 23380020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 62524 - 62485
Alignment:
Q  172 caattgtattgaaactattatgattaatgaaatgctataa 211  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  62524 caattgtattgaaactcttattattaatgaaatgctataa 62485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University