View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_high_24 (Length: 294)
Name: NF3176_high_24
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 37664066 - 37664331
Alignment:
| Q |
8 |
cagcagagacgccaatatcgactagagttgccattttcttctccctttaaaacacactttaacctacacatatttnnnnnnntaagtcatgaaattggct |
107 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
37664066 |
cagcagaaacgccaatatcgactagagttgccattttcttctccctttaaaacacactttaacctacacatatttaaaaaaataagtcatgaaattggct |
37664165 |
T |
|
| Q |
108 |
ttccgatttcaagtagcatgacttctaaattcatttcaggcaatattcatccgaacattgtaattataatgtattatatcagagannnnnnnnnnnnnaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
37664166 |
ttccgatttcaagtagcatgacttctaaattcatttcaggcaatattcatccgaacattgtaattataatatattatatcagaga--tttttttttttaa |
37664263 |
T |
|
| Q |
208 |
ttagaaaggtggaattattattaataacggtgacataactccgttcattgaggttacaaactcttacc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37664264 |
ttagaaaggtggaattattattaataacggtgacataactccgttcattgaggttacaaactcttacc |
37664331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University