View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_25 (Length: 294)
Name: NF3176_high_25
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 6943248 - 6943012
Alignment:
| Q |
13 |
aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta |
112 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6943248 |
aatataatcatatgtatctttggtagctcgaccatgtatcaaaggaaaatccaagtcgcgccccaaattggccacaaaacagatagaggagatttcttta |
6943149 |
T |
|
| Q |
113 |
atac-ttgtttaacttgctatattattataataagtaataacaagtgtgacaga-tttcttttgtagtgataaaaataattcccggtttaatgaagtgaa |
210 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6943148 |
atactttgtttaacttgcta---tattataataagtaataacaagtgtgacagattttcttttgtagtgataaaaataattcccggtttgatgaagtgaa |
6943052 |
T |
|
| Q |
211 |
caactaagatcaataatgacttaaacaaatttctttcttt |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6943051 |
caactaagatcaataatgacttaaacaaatttctttcttt |
6943012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 32456385 - 32456490
Alignment:
| Q |
13 |
aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta |
112 |
Q |
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||||||| ||||||||| | | ||||||||||||||||||||||||| |||||| |||||||||||||||||| || || ||||| |||||||||||| |
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| T |
32456385 |
aatataaccatatgtatttgtagtagctcgaccttgtatcaaaggaaatcccaagtagtgccccaaattggccacgaagcgaatagaagagatttcttta |
32456484 |
T |
|
| Q |
113 |
atactt |
118 |
Q |
| |
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|||||| |
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| T |
32456485 |
atactt |
32456490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 15579072 - 15578967
Alignment:
| Q |
13 |
aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
15579072 |
aatataatcatatgtatctttggtagctcgaccttgtatcaaaggaaaacccaagtagtgtcccaaattggccacaaaacggataggggagatttcttta |
15578973 |
T |
|
| Q |
113 |
atactt |
118 |
Q |
| |
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|||||| |
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|
| T |
15578972 |
atactt |
15578967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 1272674 - 1272570
Alignment:
| Q |
14 |
atataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttctttaa |
113 |
Q |
| |
|
||||||||||| ||||||||| |||||| ||||||||||||||||||| |||||| ||||| |||||||||||| |||| |||||| || |||||||||| |
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| T |
1272674 |
atataatcataagtatctttggtagctccaccttgtatcaaaggaaaacccaagtagtgcctcaaattggccaccaaacagatagatgatatttctttaa |
1272575 |
T |
|
| Q |
114 |
tactt |
118 |
Q |
| |
|
||||| |
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|
| T |
1272574 |
tactt |
1272570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 26172976 - 26172872
Alignment:
| Q |
13 |
aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta |
112 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |||||||| |||| | |||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
26172976 |
aatataatcatatgtatctttggtaggtcgaccttgtatcgaaggaaaacccaactagtgccc-aaattggccacaaaacggatagagaagatttcttta |
26172878 |
T |
|
| Q |
113 |
atactt |
118 |
Q |
| |
|
|||||| |
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|
| T |
26172877 |
atactt |
26172872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 51608807 - 51608912
Alignment:
| Q |
13 |
aatataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagtcgtgccccaaattggccacaaaacggatagaggagatttcttta |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||| || || || ||||||||||||||| || | |||| || |||||| |||| |
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| T |
51608807 |
aatataatcatatgtatctttagtagctcgaccttgaataaaaggaaagcccgtgtagttccccaaattggccacgaagcagataaagaagatttattta |
51608906 |
T |
|
| Q |
113 |
atactt |
118 |
Q |
| |
|
|||||| |
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|
| T |
51608907 |
atactt |
51608912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 13882680 - 13882772
Alignment:
| Q |
14 |
atataatcatatgtatctttgatagctcgaccttgtatcaaaggaaaatccaagt-cgtgccccaaattggccacaaaacggatagaggagatttctt |
110 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||||| |||||| | | ||||||||||||||| ||| |||||||||||||||||| |
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| T |
13882680 |
atataatcatatgtatcattgata-----aacttgtatcaaaggaaaacccaagtacttcccccaaattggccacgaaatggatagaggagatttctt |
13882772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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