View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3176_high_27 (Length: 293)
Name: NF3176_high_27
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 32515443 - 32515708
Alignment:
| Q |
18 |
aacatttgtgaatgcaacgaggtcaccaacctcaggttcatattttccaacaccgtacacttcttcggtagtgttcttcaatgtagtttgatagaacaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32515443 |
aacatttgtgaatgcaacgaggtcaccaacctcaggttcatattttcctacaccgtacacttcttcggtagtgttcttcaatgtagtttgatagaacaag |
32515542 |
T |
|
| Q |
118 |
gcgtggggatagttgaagtctttggatatttccattgtcctgatttcgcaaaaagcttgaggaacattccacaagcttgaagacagataactatgtgttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32515543 |
gcgtggggatagttgaagtctttggatatttccattgtcctgatttcgcaaaaagcttgaggaacattccacaagcttgaagacagataactatgtgttt |
32515642 |
T |
|
| Q |
218 |
cctcaatcaatgcaggaaagaatgaattcacgtagtcatttgttgacatgaacgtctttggaatct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32515643 |
cctcaatcaatgcaggaaagaatgaattcacgtagtcatttgttgagatgaacgtctttggaatct |
32515708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 32542309 - 32542044
Alignment:
| Q |
21 |
atttgtgaatgcaacgaggtcaccaacctcaggttcatattttccaacaccgtacacttcttcggtagtgttcttcaatgtagtttgatagaacaaggcg |
120 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||||| ||||| || ||||| ||||| || ||| |||||||||||||| ||| |||||||||| || |
|
|
| T |
32542309 |
atttgtgaatgcaatgagatcaccaacctcaggttcatactttcctactccgtagacttcatcagtaatgttcttcaatgtaattttatagaacaagtcg |
32542210 |
T |
|
| Q |
121 |
tggggatagttgaagtctttggatatttccattgtcctgatttcgcaaaaag---cttgaggaacattccacaagcttgaagacagataactatgtgttt |
217 |
Q |
| |
|
| ||| |||||| | || |||||||||||||| |||||||| ||||||| ||| ||| ||| || |||||||||| | |||| ||||||||||| |
|
|
| T |
32542209 |
tacggaggattgaagaccttcgatatttccattgttctgatttcacaaaaagaagctttaggcacactcatcaagcttgaatatagatcactatgtgttt |
32542110 |
T |
|
| Q |
218 |
cctcaatcaatgcaggaaagaatgaattcacgtagtcatttgttgacatgaacgtctttggaatct |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||| ||||||| |
|
|
| T |
32542109 |
cctcaatcaatgcaggaaagaatgaattcgtgtaatcatttgttgacaagaatgtcttcggaatct |
32542044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 235
Target Start/End: Original strand, 28858330 - 28858377
Alignment:
| Q |
188 |
acaagcttgaagacagataactatgtgtttcctcaatcaatgcaggaa |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||| ||||| ||||| |
|
|
| T |
28858330 |
acaagcttgaagacagatcactatgagtttcctcaaccaatgaaggaa |
28858377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University