View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3176_high_28 (Length: 284)
Name: NF3176_high_28
Description: NF3176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3176_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 260512 - 260238
Alignment:
| Q |
1 |
ctctttcattccattgaggtaatctttgatttgatagaaaacttagagaattgtctaaagttcnnnnnnnatgttcaagagcaacttatgcttctttcat |
100 |
Q |
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| T |
260512 |
ctctttcattccattgaggtaatctttgatttgatagaaaacttagagaattgtctaaagttctttttttatgttcaagagcaacttatgcttctttcgt |
260413 |
T |
|
| Q |
101 |
agtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgttcatttaaatgggctgtaacatatattcaaatacattgaagaaaggacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
260412 |
agtgtaagatgggttgaaagttgatgagtggatttgagttttcattttgttcatttaaatgggctgcaacatatattcaaatacattgaagaaaggacta |
260313 |
T |
|
| Q |
201 |
gagcattgaagtaaggagataaggctttatgaggaagaatgacattcacggactggttacactttagagaataat |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
260312 |
gagcattgaagtaaggagataaggctttatgaggaagaatgacattcacagactggttacactttagagattaat |
260238 |
T |
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